Chunlei Wu

Summary

Affiliation: Genomics Institute of the Novartis Research Foundation
Country: USA

Publications

  1. ncbi BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources
    Chunlei Wu
    Genomics Institute of the Novartis Research Foundation, 10675 John Jay Hopkins Dr, San Diego, CA 92121, USA
    Genome Biol 10:R130. 2009
  2. ncbi Gene set enrichment in eQTL data identifies novel annotations and pathway regulators
    Chunlei Wu
    Genomics Institute of the Novartis Research Foundation, San Diego, California, United States of America
    PLoS Genet 4:e1000070. 2008
  3. ncbi A gene wiki for community annotation of gene function
    Jon W Huss
    San Diego State University, Bioinformatics and Medical Informatics Graduate Program, San Diego, California, USA
    PLoS Biol 6:e175. 2008
  4. ncbi TCLUST: a fast method for clustering genome-scale expression data
    Banu Dost
    Department of Computer Science and Engineering, University of California, San Diego, CA 92093, USA
    IEEE/ACM Trans Comput Biol Bioinform 8:808-18. 2011
  5. ncbi CAFET algorithm reveals Wnt/PCP signature in lung squamous cell carcinoma
    Yue Hu
    Genomics Institute of the Novartis Research Foundation, San Diego, California, United States of America
    PLoS ONE 6:e25807. 2011
  6. ncbi Identification of serum-derived sphingosine-1-phosphate as a small molecule regulator of YAP
    Eric Miller
    Genomics Institute of the Novartis Research Foundation, San Diego, CA 92121, USA
    Chem Biol 19:955-62. 2012
  7. ncbi Genomewide association analysis in diverse inbred mice: power and population structure
    Phillip McClurg
    Genomics Institute of the Novartis Research Foundation, San Diego, California 92121, USA
    Genetics 176:675-83. 2007
  8. ncbi Short oligonucleotide probes containing G-stacks display abnormal binding affinity on Affymetrix microarrays
    Chunlei Wu
    Genomic Institute of Novartis Research Foundation, 10675 John Jay Hopkins Dr, San Diego, CA 92121, USA
    Bioinformatics 23:2566-72. 2007

Detail Information

Publications8

  1. ncbi BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources
    Chunlei Wu
    Genomics Institute of the Novartis Research Foundation, 10675 John Jay Hopkins Dr, San Diego, CA 92121, USA
    Genome Biol 10:R130. 2009
    ..gnf.org, a centralized gene portal for aggregating distributed gene annotation resources. Moreover, BioGPS embraces the principle of community intelligence, enabling any user to easily and directly contribute to the BioGPS platform...
  2. ncbi Gene set enrichment in eQTL data identifies novel annotations and pathway regulators
    Chunlei Wu
    Genomics Institute of the Novartis Research Foundation, San Diego, California, United States of America
    PLoS Genet 4:e1000070. 2008
    ..We believe that the specific molecular hypotheses generated in this study will reveal many additional pathway members and regulators, and that the analysis approaches described herein will be broadly applicable to other eQTL data sets...
  3. ncbi A gene wiki for community annotation of gene function
    Jon W Huss
    San Diego State University, Bioinformatics and Medical Informatics Graduate Program, San Diego, California, USA
    PLoS Biol 6:e175. 2008
  4. ncbi TCLUST: a fast method for clustering genome-scale expression data
    Banu Dost
    Department of Computer Science and Engineering, University of California, San Diego, CA 92093, USA
    IEEE/ACM Trans Comput Biol Bioinform 8:808-18. 2011
    ..Source code for TCLUST is downloadable at http://www.cse.ucsd.edu/~bdost/tclust.)..
  5. ncbi CAFET algorithm reveals Wnt/PCP signature in lung squamous cell carcinoma
    Yue Hu
    Genomics Institute of the Novartis Research Foundation, San Diego, California, United States of America
    PLoS ONE 6:e25807. 2011
    ..Our results suggest that SCC and AC utilize different branches of the Wnt pathway during oncogenesis...
  6. ncbi Identification of serum-derived sphingosine-1-phosphate as a small molecule regulator of YAP
    Eric Miller
    Genomics Institute of the Novartis Research Foundation, San Diego, CA 92121, USA
    Chem Biol 19:955-62. 2012
    ..These results revealed potent small molecule regulators of YAP and suggest that S1P and LPA might modulate cell proliferation and tumorigenesis through YAP activation...
  7. ncbi Genomewide association analysis in diverse inbred mice: power and population structure
    Phillip McClurg
    Genomics Institute of the Novartis Research Foundation, San Diego, California 92121, USA
    Genetics 176:675-83. 2007
    ..These eQTL data confirmed that the MDP is a suitable mapping population for QTL discovery and that eQTL results can serve as a gold standard for relative measures of statistical power...
  8. ncbi Short oligonucleotide probes containing G-stacks display abnormal binding affinity on Affymetrix microarrays
    Chunlei Wu
    Genomic Institute of Novartis Research Foundation, 10675 John Jay Hopkins Dr, San Diego, CA 92121, USA
    Bioinformatics 23:2566-72. 2007
    ..Our findings are expected to be useful in microarray design and data analysis...