Research Topics
Genomes and GenesSpecies | Yingye ZhengSummaryAffiliation: Fred Hutchinson Cancer Research Center Country: USA Publications
Research Grants
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Detail Information
Publications
Application of the time-dependent ROC curves for prognostic accuracy with multiple biomarkersYingye Zheng
Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue North, Seattle, Washington 98109, USA
Biometrics 62:279-87. 2006..Our results indicate the proposed methods are both flexible and efficient. We contrast these methods with an application concerning the prognostic accuracies of expression levels of six genes...
Evaluating prognostic accuracy of biomarkers under competing riskYingye Zheng
Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue North, Seattle, Washington 98109, USA
Biometrics 68:388-96. 2012..The proposed procedures are illustrated with data from a prostate cancer prognostic study...
A practical multifaceted approach to selecting differentially expressed genesYingye Zheng
Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA
Cancer Inform 3:203-12. 2007..They are simply descriptive in nature. We contrast the mp-values with multiple testing p-values in the context of data from a breast cancer prognosis study and from a simulation model...
Partly conditional survival models for longitudinal dataYingye Zheng
Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue N, M2 B230, P O Box 19024, Seattle, Washington 98109 1024, USA
Biometrics 61:379-91. 2005..The proposed methods allow a flexible characterization of the association between a longitudinal covariate process and a survival time, and facilitate the direct prediction of survival probabilities in the time-varying covariate setting...
Assessing accuracy of mammography in the presence of verification bias and intrareader correlationYingye Zheng
Division of Public Health Sciences, Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue, North Seattle, Washington 98109, USA
Biometrics 61:259-68. 2005..We apply the methodology to mammography as performed by community radiologists...
On combining family-based and population-based case-control data in association studiesYingye Zheng
Biostatistics and Biomathematics Program, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, USA
Biometrics 66:1024-33. 2010..Efficiencies of different designs are contrasted in the simulation. We applied the methods to data from the Colorectal Cancer Family Registry...
Semiparametric estimation of time-dependent ROC curves for longitudinal marker dataYingye Zheng
Division of Public Health Sciences, Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue North, Seattle, WA 98109, USA
Biostatistics 5:615-32. 2004..1999, Medical Decision Making, 19, 242-251) suggests that the ability to relax distributional assumptions may be important in practice...
Semiparametric models of time-dependent predictive values of prognostic biomarkersYingye Zheng
Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue North, Seattle, Washington 98109, USA
Biometrics 66:50-60. 2010..We illustrate our approach with numerical studies and a dataset from a prostate cancer study...
Prospective accuracy for longitudinal markersYingye Zheng
Fred Hutchinson Cancer Research Center, 1100 Fairview Ave N, M2 B500, P O Box 19024, Seattle, Washington 98109 1024, USA
Biometrics 63:332-41. 2007..We illustrate the new methods by analyzing a well-known data set from HIV research, the Multicenter AIDS Cohort Study data...
Body size, IGF and growth hormone polymorphisms, and colorectal adenomas and hyperplastic polypsKaren J Wernli
Program in Cancer Prevention, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA
Growth Horm IGF Res 20:305-9. 2010....
Integrating the predictiveness of a marker with its performance as a classifierMargaret S Pepe
Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA
Am J Epidemiol 167:362-8. 2008..The methods are demonstrated with data on prostate-specific antigen and risk factors from the Prostate Cancer Prevention Trial, 1993-2003...
Survival model predictive accuracy and ROC curvesPatrick J Heagerty
Department of Biostatistics, University of Washington, P O Box 357232, Seattle, Washington 98195 7232, USA
Biometrics 61:92-105. 2005..Semiparametric estimation methods appropriate for both proportional and nonproportional hazards data are introduced, evaluated in simulations, and illustrated using two familiar survival data sets...
Evaluating the ROC performance of markers for future eventsMargaret S Pepe
Biostatistics and Biomathematics, Fred Hutchinson Cancer Research Center, 1100 Fairview Ave N, M2 B500, Seattle, WA 98109, USA
Lifetime Data Anal 14:86-113. 2008..Applications to two datasets are presented...
Common colorectal cancer risk variants in SMAD7 are associated with survival among prediagnostic nonsteroidal anti-inflammatory drug users: a population-based study of postmenopausal womenMichael N Passarelli
Public Health Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA
Genes Chromosomes Cancer 50:875-86. 2011..33-5.37] and each minor allele of rs4464148 was associated with better survival (HR = 0.41, CI 0.18-0.94). SMAD7 variants known to be important for CRC risk were associated with disease-specific survival among prediagnostic NSAID users...
The Early Detection Research Network's Specimen reference sets: paving the way for rapid evaluation of potential biomarkersZiding Feng
Fred Hutchinson Cancer Research Center, Seattle, WA, USA
Clin Chem 59:68-74. 2013..The EDRN has developed a robust triage and validation system that serves the roles of both "facilitator" and "brake."..
The relationship between gravidity and parity and colorectal cancer riskKaren J Wernli
Fred Hutchinson Cancer Research Center, Seattle, Washington 98109 1024, USA
J Womens Health (Larchmt) 18:995-1001. 2009....
Changes in cancer worry associated with participation in ovarian cancer screeningM Robyn Andersen
Fred Hutchinson Cancer Research Center, Seattle, WA 98109 1024, USA
Psychooncology 16:814-20. 2007..Further research will be required to examine the possibility that screening reduces worry when women receive only normal, presumably reassuring, results...
Estrogen plus progestin use, microsatellite instability, and the risk of colorectal cancer in womenPolly A Newcomb
Fred Hutchinson Cancer Research Center and Department of Epidemiology, University of Washington, Seattle, Washington 98109, USA
Cancer Res 67:7534-9. 2007..Progestin may enhance the estrogenic effect of conjugated estrogen so the combination may be more biologically active in the colon than E alone...
Reproducibility of serum leptin, insulin-like growth factor-I, and insulin-like growth factor-binding protein-3 measurementsVictoria M Chia
Cancer Prevention Program, Fred Hutchinson Cancer Research Center, Seattle, Wash 98109, USA
Horm Res 69:295-300. 2008....
Determinants of aspirin metabolism in healthy men and women: effects of dietary inducers of UDP-glucuronosyltransferasesSandi L Navarro
Fred Hutchinson Cancer Research Center, University of Washington, Seattle, Wash, USA
J Nutrigenet Nutrigenomics 4:110-8. 2011..Interindividual variation in aspirin (ASA) metabolism is attributed to concomitant use of drugs or alcohol, urine pH, ethnicity, sex, and genetic variants in UDP-glucuronosyltransferases (UGT). Little is known about the effects of diet...
On combining triads and unrelated subjects data in candidate gene studies: an application to data on testicular cancerLi Hsu
Biostatistics and Biomathematics Program, Fred Hutchinson Cancer Research Center, Seattle, Wash, USA
Hum Hered 67:88-103. 2009..Extensive simulation experiments demonstrate that the proposed estimation and inferential methods perform well in realistic settings. We illustrate the method by an application to a study of testicular cancer...
A unified mixed-effects model for rare-variant association in sequencing studiesJianping Sun
Division of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington
Genet Epidemiol 37:334-44. 2013..Such information may be useful for generating hypothesis in future studies...
Evaluating the predictive value of biomarkers with stratified case-cohort designDandan Liu
Department of Biostatistics, Vanderbilt University, Nashville, TN 37232, USA
Biometrics 68:1219-27. 2012..We illustrate new procedures using data from Framingham Offspring Study to evaluate the accuracy of a recently developed risk score incorporating biomarker information for predicting cardiovascular disease...
A multiparametric panel for ovarian cancer diagnosis, prognosis, and response to chemotherapyYingye Zheng
The Fred Hutchinson Cancer Research Center, Seattle, Washington, USA
Clin Cancer Res 13:6984-92. 2007....
Model checking for ROC regression analysisTianxi Cai
Department of Biostatistics, Harvard University, Boston, Massachusetts 02115, USA
Biometrics 63:152-63. 2007..We derive asymptotic null distributions for the residual processes and discuss resampling procedures to approximate these distributions in practice. We illustrate our methods with a dataset from the cystic fibrosis registry...
The sensitivity and specificity of markers for event timesTianxi Cai
Department of Biostatistics, Harvard University, Boston, MA 02115, USA
Biostatistics 7:182-97. 2006..We illustrate our methods with data from the Cardiovascular Health Study, relating the FR-score measured at enrollment to subsequent risk of cardiovascular events...
Performance of diagnostic mammography for women with signs or symptoms of breast cancerWilliam E Barlow
W E Barlow, Center for Health Studies, Group Health Cooperative, Department of Biostatistics, University of Washington, Seattle 98101 1448, USA
J Natl Cancer Inst 94:1151-9. 2002..We evaluated whether age, breast density, self-reported breast lump, and previous mammography influence the performance of diagnostic mammography...
A multiparametric serum kallikrein panel for diagnosis of non-small cell lung carcinomaChris Planque
Department of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, Ontario, Canada
Clin Cancer Res 14:1355-62. 2008..Here, we examined the clinical value of 11 members of the tissue kallikrein family as potential biomarkers for lung cancer diagnosis...
Aberrant promoter methylation of multiple genes during multistep pathogenesis of colorectal cancersTakao Takahashi
Hamon Center for Therapeutic Oncology Research, University of Texas Southwestern Medical Center, Dallas, TX 75390-8593, USA
Int J Cancer 118:924-31. 2006..Our study constitutes the most comprehensive methylation profile of CRCs, demonstrates that methylation commences early during CRC pathogenesis and is an age-related phenomenon...
DNA methylation profiles of lymphoid and hematopoietic malignanciesTakao Takahashi
Hamon Center for Therapeutic Oncology Research, University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA
Clin Cancer Res 10:2928-35. 2004..CONCLUSIONS: The three major forms of lymphoid/hematopoietic malignancies show overlapping but individual patterns of methylation...
Detection of ductal carcinoma in situ in women undergoing screening mammographyVirginia L Ernster
Department of Epidemiology and Biostatistics, School of Medicine, University of California, San Francisco, USA
J Natl Cancer Inst 94:1546-54. 2002..Given uncertainty about the natural history of DCIS, the clinical significance of screen-detected DCIS needs further investigation...
Use of the American College of Radiology BI-RADS to report on the mammographic evaluation of women with signs and symptoms of breast diseaseBerta M Geller
Dept of Health Promotion Research, Univ of Vermont, 1 S Prospect St, Burlington, VT 05401 3444, USA
Radiology 222:536-42. 2002..To examine whether mammographic assessments and recommendations are linked as expected, based on the Breast Imaging Reporting and Data System (BI-RADS), for the evaluation of women with signs and symptoms of breast disease...
Research Grants
- Statistical Methods for Prospective Evaluation of BiomarkersYingye Zheng; Fiscal Year: 2010..The research will demonstrate lasting usefulness as more biomarkers are developed and studied for potential impact on public health. ..
