- Optimizing transformations for automated, high throughput analysis of flow cytometry dataGreg Finak
Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, 1100 Fariview Ave N, Seattle, WA 98109, USA
BMC Bioinformatics 11:546. 2010..By making some modelling assumptions about the transformed data, we develop maximum likelihood criteria to optimize parameter choice for these different transformations...
- QUAliFiER: an automated pipeline for quality assessment of gated flow cytometry dataGreg Finak
Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue North, Seattle, WA 98109, USA
BMC Bioinformatics 13:252. 2012..Gated cell populations and their statistics must be monitored within the context of the experimental run, assay, and the overall study...
- Data exploration, quality control and testing in single-cell qPCR-based gene expression experimentsAndrew McDavid
Department of Statistics, University of Washington, Seattle, WA 98195, USA
Bioinformatics 29:461-7. 2013..However, few analytic tools have been developed specifically for the statistical and analytical challenges of single-cell quantitative polymerase chain reactions data...