Research Topics
| J S ClarkSummaryAffiliation: Duke University Medical Center Country: USA Publications
| Collaborators
|
Detail Information
Publications
A future for models and data in environmental scienceJames S Clark
Nicholas School of the Environment and Department of Biology, Duke University, Durham, NC 27708, USA
Trends Ecol Evol 21:375-80. 2006..With this potential come new challenges, including some that are specific and technical and others that are general and will involve reexamination of the role of inference and prediction...
Resolving the biodiversity paradoxJames S Clark
Nicholas School of the Environment, Duke University, Durham, NC 27708, USA
Ecol Lett 10:647-59; discussion 659-62. 2007..This mechanism can explain coexistence of species that would not occur with simple, low-dimensional tradeoff scenarios...
The coherence problem with the Unified Neutral Theory of BiodiversityJames S Clark
Nicholas School of the Environment, Department of Biology, Department of Statistical Science, Duke University, Durham, NC 27708, USA
Trends Ecol Evol 27:198-202. 2012..Models lacking explicit species can make useful predictions, but this does not support neutral theory. I provide s suggestions that could help reduce confusion generated by the debate...
Evidence from individual inference for high-dimensional coexistence: long-term experiments on recruitment responseJames S Clark
Nicholas School of the Environment, Duke University, Durham, North Carolina, United States of America
PLoS ONE 7:e30050. 2012..To understand how this pattern of variation is related to niche variables, we analyzed responses to canopy gaps, long viewed as a key variable responsible for species coexistence...
Individual-scale variation, species-scale differences: inference needed to understand diversityJames S Clark
Nicholas School of the Environment, Duke University, Durham, NC 27708, USA
Ecol Lett 14:1273-87. 2011..We show how to identify when aggregation is the problem, where it has caused controversy, and propose three ways to address it...
Inferential ecosystem models, from network data to predictionJames S Clark
Nicholas School of the Environment, Duke University, Durham, North Carolina 27708, USA
Ecol Appl 21:1523-36. 2011..Our examples involve soil moisture and sap flux, but we discuss broader application of the approach, including its implications for network design...
Individuals and the variation needed for high species diversity in forest treesJames S Clark
Nicholas School of the Environment, Department of Biology, Duke University, Durham, NC 27708, USA
Science 327:1129-32. 2010..Results are consistent with theory predicting that coexistence depends on competition being stronger within than between species, shown here by analysis of individual-level responses to environmental fluctuation...
Beyond neutral scienceJames S Clark
Nicholas School of the Environment, Department of Biology and Department of Statistical Science, Duke University, Durham, NC 27708, USA
Trends Ecol Evol 24:8-15. 2009..Finally, I suggest that the dramatic shift in ecological research to focus on neutrality could have a cost in terms of scientific understanding and relevance to real biodiversity threats...
Tree growth inference and prediction from diameter censuses and ring widthsJames S Clark
Nicholas School of the Environment, Duke University, Durham, North Carolina 27708, USA
Ecol Appl 17:1942-53. 2007..An example involving multiple species and multiple stands with tree-ring data and up to 14 years of tree census data illustrates how different levels of information at the tree and stand level contribute to inference and prediction...
Ecological forecasts: an emerging imperativeJ S Clark
Department of Biology, Duke University, Durham, NC 27708 USA
Science 293:657-60. 2001..Interdisciplinary linkages are necessary because of the climate and societal controls on ecosystems, the feedbacks involving social change, and the decision-making relevance of forecasts...
Stability of forest biodiversityJames S Clark
Center on Global Change, Biology, and Nicholas School of the Environment, Duke University, Durham, North Carolina 27708, USA
Nature 423:635-8. 2003..By contrast with the neutral prediction of increasing variance among sites over time, we show that variances in post-Glacial tree abundances among sites stabilize rapidly, and abundances remain coherent over broad geographical scales...
Individual-scale inference to anticipate climate-change vulnerability of biodiversityJames S Clark
Nicholas School of the Environment, Duke University, Durham, NC 27708, USA
Philos Trans R Soc Lond B Biol Sci 367:236-46. 2012..However, by aggregating in specific ways (over individuals, years, and other input variables), we provide ways to summarize and rank species in terms of their risks from climate change...
Estimating seed and pollen movement in a monoecious plant: a hierarchical Bayesian approach integrating genetic and ecological dataEmily V Moran
NIMBioS, University of Tennessee, Knoxville, TN 37996 1527, USA
Mol Ecol 20:1248-62. 2011..9.3 m), suggesting that, under some circumstances, oaks may be less dispersal-limited than is commonly thought, with a greater potential for range shifts in response to climate change...
Predicting biodiversity change: outside the climate envelope, beyond the species-area curveInes Ibanez
University Program in Ecology, Duke University, Durham, North Carolina 27708 90338, USA
Ecology 87:1896-906. 2006....
A predictive framework to understand forest responses to global changeSean M McMahon
Nicholas School of the Environment, Duke University, Durham, North Carolina 27708, USA
Ann N Y Acad Sci 1162:221-36. 2009....
Understanding movement data and movement processes: current and emerging directionsRobert S Schick
Nicholas School of the Environment and Earth Sciences, Duke University, Durham, NC 27708 0328, USA
Ecol Lett 11:1338-50. 2008..This model moves away from traditional random walks, and instead focuses inference on how moving animals with complex behavior interact with their landscape and make choices about its suitability...
Rising CO2 levels and the fecundity of forest treesS L LaDeau
Department of Biology and University Program in Ecology, Duke University, Durham, NC 27708, USA
Science 292:95-8. 2001..This reproductive response to future increases in atmospheric CO2 concentration is expected to change loblolly dispersal and recruitment patterns...
Evaluating the sources of potential migrant species: implications under climate changeInes Ibanez
University Program in Ecology, Duke University, Durham, North Carolina 27708 90338, USA
Ecol Appl 18:1664-78. 2008....
Fire cycles in North American interior grasslands and their relation to prairie droughtK J Brown
Department of Biology, Duke University, P O Box 90338, Durham, NC 27708, USA
Proc Natl Acad Sci U S A 102:8865-70. 2005..Accordingly, the effects of global warming from increasing greenhouse gases will be superimposed on this natural variability of drought...
Density-dependent mortality and the latitudinal gradient in species diversityJanneke Hille Ris Lambers
Biology Department, Duke University, Durham, North Carolina 27708, USA
Nature 417:732-5. 2002..Thus, unless the strength of density-dependent mortality varies with latitude, this mechanism is not likely to explain the high diversity of tropical forests...
Predicting population survival under future climate change: density dependence, drought and extraction in an insular bighorn sheepFernando Colchero
Nicholas School of the Environment, Duke University, Box 90328, Durham, NC 27708 USA
J Anim Ecol 78:666-73. 2009..Current climate change scenarios and their underlying uncertainty make studies such as this one crucial for understanding the dynamics of ungulate populations and their conservation...
Biomass and toxicity responses of poison ivy (Toxicodendron radicans) to elevated atmospheric CO2Jacqueline E Mohan
Department of Biology, Duke University, Durham, NC 27708, USA
Proc Natl Acad Sci U S A 103:9086-9. 2006..Our results indicate that Toxicodendron taxa will become more abundant and more "toxic" in the future, potentially affecting global forest dynamics and human health...
Long-term CO2 enrichment of a forest ecosystem: implications for forest regeneration and successionJacqueline E Mohan
Duke University, Graduate Program in Ecology, and Department of Biology, Durham, North Carolina 27708, USA
Ecol Appl 17:1198-212. 2007..Our data suggest a small CO2 fertilization effect on tree productivity, and the possibility of reduced carbon accumulation rates relative to today's forests due to changes in species composition...
Does predation contribute to tree diversity?Brian Beckage
Department of Botany, University of Vermont, Marsh Life Science Building, Burlington, VT 05405, USA
Oecologia 143:458-69. 2005..rubra (17% of sites). Tradeoffs between seedling performance and fecundity may promote the diversity of seedling regeneration by increasing the probability of inferior competitors capturing regeneration sites...
The next 20 years of ecology and evolutionAndrew F Read
Trends Ecol Evol 21:354-5. 2006
The past 20 years of ecology and evolutionAndrew F Read
Trends Ecol Evol 21:287. 2006
