Andres Kriete

Summary

Affiliation: Drexel University
Country: USA

Publications

  1. doi request reprint Computational systems biology of aging
    Andres Kriete
    School of Biomedical Engineering, Science and Health Systems, Drexel University, Bossone Research Center, Philadelphia, PA, USA
    Wiley Interdiscip Rev Syst Biol Med 3:414-28. 2011
  2. ncbi request reprint Introductory review of computational cell cycle modeling
    Andres Kriete
    School of Biomedical Engineering, Science and Health Systems, Bossone Research Center, Drexel University, 3141 Chestnut Street, Philadelphia, PA, 19104, USA
    Methods Mol Biol 1170:267-75. 2014
  3. doi request reprint Robustness and aging--a systems-level perspective
    Andres Kriete
    School of Biomedical Engineering, Science and Health Systems, Drexel University, Bossone Research Center, 3141 Chestnut St, Philadelphia, PA 19104, USA
    Biosystems 112:37-48. 2013
  4. pmc Rule-based cell systems model of aging using feedback loop motifs mediated by stress responses
    Andres Kriete
    School of Biomedical Engineering, Science and Health Systems, Drexel University, Bossone Research Center, Philadelphia, Pennsylvania, United States of America
    PLoS Comput Biol 6:e1000820. 2010
  5. ncbi request reprint Systems approaches to the networks of aging
    Andres Kriete
    School of Biomedical Engineering, Drexel University, Science and Health System, Chestnut Street 3401, Philadelphia, PA 19104, USA
    Ageing Res Rev 5:434-48. 2006
  6. ncbi request reprint Automated quantification of quantum-dot-labelled epidermal growth factor receptor internalization via multiscale image segmentation
    A Kriete
    School of Biomedical Engineering, Science and Health Systems, Drexel University, Philadelphia, PA 19104, USA
    J Microsc 222:22-7. 2006
  7. ncbi request reprint System-wide analysis of hepatotoxicological responses: tissomics is key
    Andres Kriete
    Icoria Inc, Pittsburgh, Pennsylvania, USA
    Cytometry A 69:612-9. 2006
  8. ncbi request reprint Bridging biological scales by state-space analysis and modeling using molecular, tissue cytometric and physiological data
    Andres Kriete
    School of Biomedical Engineering, Science and Health Systems, Drexel University, Philadelphia, Pennsylvania 19104, USA
    Cytometry A 69:113-6. 2006
  9. ncbi request reprint Biomarkers of aging: combinatorial or systems model?
    Andres Kriete
    School of Biomedical Engineering, Science, and Health Systems, Drexel University, Philadelphia, PA 19104, USA
    Sci Aging Knowledge Environ 2006:pe1. 2006
  10. ncbi request reprint Cytomics in the realm of systems biology
    Andres Kriete
    School of Biomedical Engineering, Science and Health Systems, Drexel University, Philadelphia, Pennsylvania 19104, USA
    Cytometry A 68:19-20. 2005

Collaborators

Detail Information

Publications19

  1. doi request reprint Computational systems biology of aging
    Andres Kriete
    School of Biomedical Engineering, Science and Health Systems, Drexel University, Bossone Research Center, Philadelphia, PA, USA
    Wiley Interdiscip Rev Syst Biol Med 3:414-28. 2011
    ..We introduce the necessary key steps to build these applications and discuss their merits and future extensions for aging research. WIREs Syst Biol Med 2011 3 414-428 DOI: 10.1002/wsbm.126..
  2. ncbi request reprint Introductory review of computational cell cycle modeling
    Andres Kriete
    School of Biomedical Engineering, Science and Health Systems, Bossone Research Center, Drexel University, 3141 Chestnut Street, Philadelphia, PA, 19104, USA
    Methods Mol Biol 1170:267-75. 2014
    ..Here we review some aspects of this process as it pertains to cell cycle modeling. ..
  3. doi request reprint Robustness and aging--a systems-level perspective
    Andres Kriete
    School of Biomedical Engineering, Science and Health Systems, Drexel University, Bossone Research Center, 3141 Chestnut St, Philadelphia, PA 19104, USA
    Biosystems 112:37-48. 2013
    ..The introduction of the robustness paradigm offers unique insights for aging research and provides novel opportunities for systems biology endeavors...
  4. pmc Rule-based cell systems model of aging using feedback loop motifs mediated by stress responses
    Andres Kriete
    School of Biomedical Engineering, Science and Health Systems, Drexel University, Bossone Research Center, Philadelphia, Pennsylvania, United States of America
    PLoS Comput Biol 6:e1000820. 2010
    ..Our work establishes a novel extendable and scalable computational approach capable to connect tractable molecular mechanisms with cellular network dynamics underlying the emerging aging phenotype...
  5. ncbi request reprint Systems approaches to the networks of aging
    Andres Kriete
    School of Biomedical Engineering, Drexel University, Science and Health System, Chestnut Street 3401, Philadelphia, PA 19104, USA
    Ageing Res Rev 5:434-48. 2006
    ..As aging manifests on a systems level, it emerges as a highly networked process regulated through feedback loops between levels of biological organization...
  6. ncbi request reprint Automated quantification of quantum-dot-labelled epidermal growth factor receptor internalization via multiscale image segmentation
    A Kriete
    School of Biomedical Engineering, Science and Health Systems, Drexel University, Philadelphia, PA 19104, USA
    J Microsc 222:22-7. 2006
    ..The capabilities realizable by simultaneous application of confocal imaging and functionalized QDs in conjunction with advanced image analysis are a prerequisite for automated and multiplexed cytomics assays...
  7. ncbi request reprint System-wide analysis of hepatotoxicological responses: tissomics is key
    Andres Kriete
    Icoria Inc, Pittsburgh, Pennsylvania, USA
    Cytometry A 69:612-9. 2006
    ....
  8. ncbi request reprint Bridging biological scales by state-space analysis and modeling using molecular, tissue cytometric and physiological data
    Andres Kriete
    School of Biomedical Engineering, Science and Health Systems, Drexel University, Philadelphia, Pennsylvania 19104, USA
    Cytometry A 69:113-6. 2006
    ..Concepts to statistically identify, correlate, and model relationships across scales are introduced, which rely on a state-space matrix derived by multi-omics data aggregation...
  9. ncbi request reprint Biomarkers of aging: combinatorial or systems model?
    Andres Kriete
    School of Biomedical Engineering, Science, and Health Systems, Drexel University, Philadelphia, PA 19104, USA
    Sci Aging Knowledge Environ 2006:pe1. 2006
    ..Such reverse engineered models not only indicate critical and diagnostic components (that is, potential biomarkers) but also should be able to predict the progression of aging through computer simulation...
  10. ncbi request reprint Cytomics in the realm of systems biology
    Andres Kriete
    School of Biomedical Engineering, Science and Health Systems, Drexel University, Philadelphia, Pennsylvania 19104, USA
    Cytometry A 68:19-20. 2005
  11. ncbi request reprint Automated tissue analysis--a bioinformatics perspective
    A Kriete
    Icoria, Pittsburgh, PA, USA
    Methods Inf Med 44:32-7. 2005
    ..The great potential of synergies between tissue analysis and bioinformatics and its perspectives in medical research and computational diagnostics are discussed...
  12. ncbi request reprint Phenotypical enrichment strategies for microarray data analysis applied in a type II diabetes study
    Keith Boyce
    Icoria, Inc, Pittsburgh, Pennsylvania, USA
    OMICS 9:251-65. 2005
    ..Evaluation based on ontological classifications proves changes in prioritization of disease-related genes that would have been overlooked by conventional gene expression analyses strategies...
  13. ncbi request reprint Gene expression analysis enriched
    Andres Kriete
    Drexel University and Coriell Bioinformatics Initiative, Coriell Institute for Medical Research, 403 Haddon Avenue, Camden, NJ 08103, USA
    Drug Discov Today 9:913-4. 2004
  14. doi request reprint Atypical pathways of NF-kappaB activation and aging
    Andres Kriete
    School of Biomedical Engineering, Science and Health Systems, Drexel University, Bossone Research Center, Philadelphia, PA 19104, USA
    Exp Gerontol 44:250-5. 2009
    ..Investigation of mechanisms of NF-kappaB in aging as an important marker of cellular stress provides guidance for the development of a systems view of cellular aging...
  15. pmc Comparing the yeast retrograde response and NF-κB stress responses: implications for aging
    Visish Srinivasan
    Department of Biology, Drexel University, Philadelphia, PA 19104, USA
    Aging Cell 9:933-41. 2010
    ..Involvement of NF-κB in chromosomal stability, coregulation of mitochondrial respiration, and cross talk with the TOR (target of rapamycin) pathway points to a conserved mechanism also found in yeast...
  16. pmc Combined histomorphometric and gene-expression profiling applied to toxicology
    Andres Kriete
    Tissue Informatics Inc, 711 Bingham Street, Suite 200, Pittsburgh, PA 15203, USA
    Genome Biol 4:R32. 2003
    ....
  17. pmc Age-associated loss of selectivity in human olfactory sensory neurons
    Nancy E Rawson
    Monell Chemical Senses Center, Philadelphia, PA, USA
    Neurobiol Aging 33:1913-9. 2012
    ..It is also possible that chronic adaptation as a result of reduced specificity contributes to observed declines in absolute sensitivity...
  18. pmc Quantifying gene network connectivity in silico: scalability and accuracy of a modular approach
    N Yalamanchili
    School of Biomedical Engineering and Health Sciences, Drexel University, Philadelphia, PA, USA
    Syst Biol (Stevenage) 153:236-46. 2006
    ..By employing a known biochemical network, the accuracy of the modular approach and its sensitivity to key assumptions are evaluated...
  19. ncbi request reprint Micro-CT of the human lung: imaging of alveoli and virtual endoscopy of an alveolar duct in a normal lung and in a lung with centrilobular emphysema--initial observations
    Henrik Watz
    Department of Pneumology, University of Frankfurt, Theodor Stern Kai 7, 60590 Frankfurt, Germany
    Radiology 236:1053-8. 2005
    ..Normal-size and enlarged alveoli became visible. A three-dimensional reconstruction of the terminal airspaces made virtual endoscopy of the alveolar ducts possible...