Research Topics
Species | THOMAS JAMES SMITHSummaryAffiliation: Donald Danforth Plant Science Center Country: USA Publications
Research Grants
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Detail Information
Publications
Structural studies on antibody recognition and neutralization of virusesTHOMAS JAMES SMITH
Donald Danforth Plant Science Center, Saint Louis, MO 63132, USA
Curr Opin Virol 1:150-6. 2011..Finally, the structure of cucumber mosaic virus bound to a loop involved in aphid transmission demonstrated the importance of the context of antigen presentation and what happens when an antibody binds near an icosahedral symmetry axis...
Untangling the glutamate dehydrogenase allosteric nightmareThomas J Smith
Donald Danforth Plant Science Center, Saint Louis, MO 63132, USA
Trends Biochem Sci 33:557-64. 2008..Ciliates, the 'missing link' in GDH evolution, might have created the antenna to accommodate changing organelle functions and was refined in humans to, at least in part, link amino acid catabolism with insulin secretion...
The structure of apo human glutamate dehydrogenase details subunit communication and allosteryThomas J Smith
Donald Danforth Plant Science Center, 975 North Warson Road, St Louis, MO 63132, USA
J Mol Biol 318:765-77. 2002..These results support the previous proposal that purines regulate GDH activity by altering the dynamics of the NAD binding domain. Finally, a possible structural mechanism for negative cooperativity is presented...
Evolution of glutamate dehydrogenase regulation of insulin homeostasis is an example of molecular exaptationAron Allen
The Donald Danforth Plant Science Center, 975 North Warson Road, St. Louis, Missouri 63132, USA
Biochemistry 43:14431-43. 2004....
Green tea polyphenols modulate insulin secretion by inhibiting glutamate dehydrogenaseChanghong Li
Donald Danforth Plant Science Center, 975 Warson Road, St. Louis, MO 63132, USA
J Biol Chem 281:10214-21. 2006..These results demonstrate that EGCG, much like the activator of GDH (BCH), can facilitate dissecting the complex regulation of insulin secretion by pharmacologically modulating the effects of GDH...
Structural studies on ADP activation of mammalian glutamate dehydrogenase and the evolution of regulationSoojay Banerjee
Donald Danforth Plant Science Center, St Louis, Missouri 63132, USA
Biochemistry 42:3446-56. 2003..This suggests that there was some selective advantage of the antenna itself and that animals evolved new functions for GDH through the addition of allosteric regulation...
Expression, purification and characterization of human glutamate dehydrogenase (GDH) allosteric regulatory mutationsJie Fang
Division of Endocrinology, The Children s Hospital of Philadelphia, 34th Street and Civic Center Boulevard, Philadelphia, PA 19104, USA
Biochem J 363:81-7. 2002....
Mutagenesis of the "leucine gate" to explore the basis of catalytic versatility in soluble methane monooxygenaseElena Borodina
Biomedical Research Centre, Sheffield Hallam University, Howard Street, Sheffield S1 1WB, United Kingdom
Appl Environ Microbiol 73:6460-7. 2007..Thus, our results indicate that the "leucine gate" in sMMO is more important in controlling the precision of regioselectivity than the sizes of substrates that can enter the active site...
High throughput screening reveals several new classes of glutamate dehydrogenase inhibitorsMing Li
Donald Danforth Plant Science Center, 975 North Warson Road, St Louis, Missouri 63132, USA
Biochemistry 46:15089-102. 2007..Therefore, these new compounds not only are new leads in the treatment of hyperactive GDH but also are useful in dissecting the complex allosteric nature of the enzyme...
Possible regulatory role for the histidine-rich loop in the zinc transport protein, ZnuABaoxian Wei
Donald Danforth Plant Science Center, 975 North Warson Road, St Louis, Missouri 63132, USA
Biochemistry 46:8734-43. 2007..From these results, we suggest that this region might be a sensor for high periplasmic levels of zinc...
The structure of a cyanobacterial bicarbonate transport protein, CmpANicole M Koropatkin
Donald Danforth Plant Science Center, St Louis, Missouri 63132, USA
J Biol Chem 282:2606-14. 2007..The binding of bicarbonate and metal appears to be highly cooperative and suggests that CmpA may co-transport bicarbonate and calcium or that calcium acts a cofactor in bicarbonate transport...
Structures of T=1 and T=3 particles of cucumber necrosis virus: evidence of internal scaffoldingUmesh Katpally
Donald Danforth Plant Science Center, 975 North Warson Road, St Louis, MO 63132, USA
J Mol Biol 365:502-12. 2007..Therefore, this region apparently has remarkably diverse functions that may be distributed unevenly among the quasi-equivalent A, B, and C subunits...
Atomic structure of a nitrate-binding protein crucial for photosynthetic productivityNicole M Koropatkin
Donald Danforth Plant Science Center, 975 North Warson Road, St Louis, MO 63132, USA
Proc Natl Acad Sci U S A 103:9820-5. 2006..Interestingly, the residues lining the ligand binding pockets suggest that they both bind nitrate. This implies that the nitrogen and carbon uptake pathways are synchronized by intracellular nitrate and nitrite...
The structure of the iron-binding protein, FutA1, from Synechocystis 6803Nicole Koropatkin
Donald Danforth Plant Science Center, 975 North Warson Road, Saint Louis, MO 63132, USA
J Biol Chem 282:27468-77. 2007..Finally, neither FutA1 nor FutA2 binds iron as a siderophore complex or in the presence of anions, and both preferentially bind ferrous over ferric ions...
Differential antifungal and calcium channel-blocking activity among structurally related plant defensinsRobert G Spelbrink
The Donald Danforth Plant Science Center, St. Louis, MO 63132, USA
Plant Physiol 135:2055-67. 2004....
Dose-ranging trial with a recombinant urokinase (urokinase alfa) for occluded central venous catheters in oncology patientsSteven R Deitcher
Section of Hematology and Coagulation Medicine, The Cleveland Clinic Foundation, Cleveland, Ohio, USA
J Vasc Interv Radiol 15:575-80. 2004....
Formaldehyde dehydrogenase preparations from Methylococcus capsulatus (Bath) comprise methanol dehydrogenase and methylene tetrahydromethanopterin dehydrogenaseEkundayo K Adeosun
Department of Biological Sciences, University of Warwick, Coventry CV4 7AL, UK
Microbiology 150:707-13. 2004..These results support previous findings that methylotrophs possess multiple pathways for formaldehyde dissimilation...
Structural determinants of metal specificity in the zinc transport protein ZnuA from synechocystis 6803Soojay Banerjee
Donald Danforth Plant Science Center, 975 North Warson Road, St Louis, MO 63132, USA
J Mol Biol 333:1061-9. 2003..Therefore, while Mn2+ transporters can bind Zn2+ in vitro they may not be able to acquire it in vivo without this structure because of the low concentration of free Zn2+...
Structural studies on antibody-virus complexesThomas J Smith
Donald Danforth Plant Science Center, St. Louis, Missouri 63132, USA
Adv Protein Chem 64:409-53. 2003
An antibody to the putative aphid recognition site on cucumber mosaic virus recognizes pentons but not hexonsValorie D Bowman
Department of Biological Sciences, Purdue University, West Lafayette, Indiana 47907, USA
J Virol 76:12250-8. 2002..Antibodies with such character have potential use as probes of viral assembly. Our results may provide an additional rationale for designing synthetic vaccines by using symmetrical viral particles...
Improved system for protein engineering of the hydroxylase component of soluble methane monooxygenaseThomas J Smith
Department of Biological Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom
Appl Environ Microbiol 68:5265-73. 2002..With these results, we have demonstrated proof of the principle for protein engineering of this uniquely versatile enzyme...
Residues near the N-terminus of protein B control autocatalytic proteolysis and the activity of soluble methane mono-oxygenaseAnastasia J Callaghan
Department of Biological Sciences, University of Warwick, Coventry, UK
Eur J Biochem 269:1835-43. 2002....
Validation of an in vitro model of human saphenous vein hyperplasiaJohn J Castronuovo
Department of Surgery, Reeves Laboratory for Surgical Research, Morristown Memorial Hospital, 100 Madison Ave, Morristown, NJ 07962 1956, USA
J Vasc Surg 35:152-7. 2002....
Research Grants
- Towards a Vaccine for the Common ColdThomas Smith; Fiscal Year: 2009..If successful, the methods developed here will also yield a rapid way to identify potential, conserved, vaccine targets for other antigenically diverse viruses as well. ..
- Mechanisms of glutamate dehydrogenase allosteryThomas Smith; Fiscal Year: 2007....
- STRUCTURAL STUDIES OF PROTEIN SUBUNITSThomas Smith; Fiscal Year: 2004..These studies have the potential of changing the way we view the early steps in the viral infection process and will allow us to develop tools that are applicable to other viral systems. ..
- Towards a Vaccine for the Common ColdTHOMAS JAMES SMITH; Fiscal Year: 2010..If successful, the methods developed here will also yield a rapid way to identify potential, conserved, vaccine targets for other antigenically diverse viruses as well. ..
