Liang Liu

Summary

Affiliation: Delaware State University
Country: USA

Publications

  1. doi request reprint Phybase: an R package for species tree analysis
    Liang Liu
    Department of Agriculture and Natural Resources, Delaware State University, Dover, DE 19901, USA
    Bioinformatics 26:962-3. 2010
  2. pmc A maximum pseudo-likelihood approach for estimating species trees under the coalescent model
    Liang Liu
    Department of Agriculture and Natural Resources, Delaware State University, Dover, DE 19901, USA
    BMC Evol Biol 10:302. 2010
  3. doi request reprint Estimating species trees from unrooted gene trees
    Liang Liu
    Department of Agriculture and Natural Resources, Delaware State University, Dover, DE 19901, USA
    Syst Biol 60:661-7. 2011
  4. pmc A phylogenetic model for understanding the effect of gene duplication on cancer progression
    Qin Ma
    Department of Biochemistry and Molecular Biology and Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA, Department of Statistics, University of Georgia, Athens, GA 30602, USA, Department of Molecular Biology, University of Wyoming, Laramie, WY 82071, USA, Department of Biostatistics, Georgia Southern University, Statesboro, GA 30458, USA, School of Mathematics, Shandong University, Jinan 250100, China, Department of Computer Science and Engineering, University of Nebraska Lincoln, Lincoln, NE 65888, USA, BioEnergy Science Center, Oak Ridge, TN 37830, USA and College of Computer Science and Technology, Jilin University, Changchun, Jilin, China
    Nucleic Acids Res 42:2870-8. 2014

Collaborators

Detail Information

Publications4

  1. doi request reprint Phybase: an R package for species tree analysis
    Liang Liu
    Department of Agriculture and Natural Resources, Delaware State University, Dover, DE 19901, USA
    Bioinformatics 26:962-3. 2010
    ..It provides functions to read, write, manipulate, simulate, estimate, summarize and plot species trees, which contain not only the topology and branch lengths but also population sizes...
  2. pmc A maximum pseudo-likelihood approach for estimating species trees under the coalescent model
    Liang Liu
    Department of Agriculture and Natural Resources, Delaware State University, Dover, DE 19901, USA
    BMC Evol Biol 10:302. 2010
    ..In this paper, we develop a pseudo-likelihood function of the species tree to obtain maximum pseudo-likelihood estimates (MPE) of species trees, with branch lengths of the species tree in coalescent units...
  3. doi request reprint Estimating species trees from unrooted gene trees
    Liang Liu
    Department of Agriculture and Natural Resources, Delaware State University, Dover, DE 19901, USA
    Syst Biol 60:661-7. 2011
    ..In addition, the NJ(st) method can handle missing data and is thus useful in phylogenomic studies in which data sets often contain missing loci for some individuals...
  4. pmc A phylogenetic model for understanding the effect of gene duplication on cancer progression
    Qin Ma
    Department of Biochemistry and Molecular Biology and Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA, Department of Statistics, University of Georgia, Athens, GA 30602, USA, Department of Molecular Biology, University of Wyoming, Laramie, WY 82071, USA, Department of Biostatistics, Georgia Southern University, Statesboro, GA 30458, USA, School of Mathematics, Shandong University, Jinan 250100, China, Department of Computer Science and Engineering, University of Nebraska Lincoln, Lincoln, NE 65888, USA, BioEnergy Science Center, Oak Ridge, TN 37830, USA and College of Computer Science and Technology, Jilin University, Changchun, Jilin, China
    Nucleic Acids Res 42:2870-8. 2014
    ..The analysis found nine duplicated genes that are significantly associated with stomach cancer. ..