- Siepel A. Phylogenomics of primates and their ancestral populations. Genome Res. 2009;19:1929-41 pubmed publisher..Finally, I discuss remaining challenges and future prospects at this nexus of phylogenetics, population genetics, and genomics. ..
- Hubisz M, Pollard K, Siepel A. PHAST and RPHAST: phylogenetic analysis with space/time models. Brief Bioinform. 2011;12:41-51 pubmed publisher..0 are available for download at http://compgen.bscb.cornell.edu/phast, under the terms of an unrestrictive BSD-style license. RPHAST can also be obtained from the Comprehensive R Archive Network (CRAN; http://cran.r-project.org). ..
- Siepel A, Diekhans M, Brejova B, Langton L, Stevens M, Comstock C, et al. Targeted discovery of novel human exons by comparative genomics. Genome Res. 2007;17:1763-73 pubmed..However, they suggest that hundreds-not thousands-of protein-coding genes are completely missing from the current gene catalogs. ..