Julius B Lucks

Summary

Affiliation: Cornell University
Country: USA

Publications

  1. pmc A modular strategy for engineering orthogonal chimeric RNA transcription regulators
    Melissa K Takahashi
    School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY 14853, USA
    Nucleic Acids Res 41:7577-88. 2013
  2. pmc Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)
    Julius B Lucks
    Department of Bioengineering, University of California, Berkeley, CA 94720, USA
    Proc Natl Acad Sci U S A 108:11063-8. 2011
  3. pmc Modeling and automation of sequencing-based characterization of RNA structure
    Sharon Aviran
    Department of Bioengineering, University of California, Berkeley, CA 94720, USA
    Proc Natl Acad Sci U S A 108:11069-74. 2011
  4. pmc Engineering naturally occurring trans-acting non-coding RNAs to sense molecular signals
    Lei Qi
    The UC Berkeley and UCSF Graduate Program in Bioengineering, University of California, Berkeley, CA 94720, USA
    Nucleic Acids Res 40:5775-86. 2012
  5. doi Rationally designed families of orthogonal RNA regulators of translation
    Vivek K Mutalik
    Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
    Nat Chem Biol 8:447-54. 2012
  6. doi An adaptor from translational to transcriptional control enables predictable assembly of complex regulation
    Chang C Liu
    Department of Bioengineering, University of California at Berkeley, Berkeley, California, USA
    Nat Methods 9:1088-94. 2012
  7. doi SHAPE-Seq: High-Throughput RNA Structure Analysis
    Stefanie A Mortimer
    Department of Molecular and Cell Biology, University of California, Berkeley, California
    Curr Protoc Chem Biol 4:275-97. 2012
  8. ncbi Why on earth?: Evaluating hypotheses about the physiological functions of human geophagy
    Sera L Young
    Department of Obstetrics and Gynecology, University of California, San Francisco, California 94105, USA
    Q Rev Biol 86:97-120. 2011
  9. pmc Versatile RNA-sensing transcriptional regulators for engineering genetic networks
    Julius B Lucks
    Department of Bioengineering, University of California, Berkeley, CA 94720, USA
    Proc Natl Acad Sci U S A 108:8617-22. 2011
  10. pmc Evolution, ecology and the engineered organism: lessons for synthetic biology
    Jeffrey M Skerker
    Department of Bioengineering, University of California, Berkeley, Berkeley, CA 94720, USA
    Genome Biol 10:114. 2009

Collaborators

  • Cole Trapnell
  • Jennifer A Doudna
  • Chang C Liu
  • Adam P Arkin
  • Lei Qi
  • Vivek K Mutalik
  • Stefanie A Mortimer
  • Sharon Aviran
  • Melissa K Takahashi
  • Lior Pachter
  • Sera L Young
  • Jeffrey M Skerker
  • Joao C Guimaraes
  • Shujun Luo
  • Gary P Schroth
  • Gretel H Pelto
  • Paul W Sherman

Detail Information

Publications10

  1. pmc A modular strategy for engineering orthogonal chimeric RNA transcription regulators
    Melissa K Takahashi
    School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY 14853, USA
    Nucleic Acids Res 41:7577-88. 2013
    ....
  2. pmc Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)
    Julius B Lucks
    Department of Bioengineering, University of California, Berkeley, CA 94720, USA
    Proc Natl Acad Sci U S A 108:11063-8. 2011
    ....
  3. pmc Modeling and automation of sequencing-based characterization of RNA structure
    Sharon Aviran
    Department of Bioengineering, University of California, Berkeley, CA 94720, USA
    Proc Natl Acad Sci U S A 108:11069-74. 2011
    ..Our results can be easily extended to other chemical probes of RNA structure, and also generalized to modeling polymerase drop-off in other sequence census-based experiments...
  4. pmc Engineering naturally occurring trans-acting non-coding RNAs to sense molecular signals
    Lei Qi
    The UC Berkeley and UCSF Graduate Program in Bioengineering, University of California, Berkeley, CA 94720, USA
    Nucleic Acids Res 40:5775-86. 2012
    ....
  5. doi Rationally designed families of orthogonal RNA regulators of translation
    Vivek K Mutalik
    Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
    Nat Chem Biol 8:447-54. 2012
    ..We discuss the potential use of these regulators in next-generation synthetic biology applications...
  6. doi An adaptor from translational to transcriptional control enables predictable assembly of complex regulation
    Chang C Liu
    Department of Bioengineering, University of California at Berkeley, Berkeley, California, USA
    Nat Methods 9:1088-94. 2012
    ..Continued application of our adaptor should produce large collections of transcriptional regulators whose inherent composability can facilitate the predictable engineering of complex synthetic circuits...
  7. doi SHAPE-Seq: High-Throughput RNA Structure Analysis
    Stefanie A Mortimer
    Department of Molecular and Cell Biology, University of California, Berkeley, California
    Curr Protoc Chem Biol 4:275-97. 2012
    ..Curr. Protoc. Chem. Biol. 4:275-297 © 2012 by John Wiley & Sons, Inc. ..
  8. ncbi Why on earth?: Evaluating hypotheses about the physiological functions of human geophagy
    Sera L Young
    Department of Obstetrics and Gynecology, University of California, San Francisco, California 94105, USA
    Q Rev Biol 86:97-120. 2011
    ..Our results indicate that human geophagy is best explained as providing protection from dietary chemicals, parasites, and pathogens, whereas animal geophagy may involve both micronutrient acquisition and protection...
  9. pmc Versatile RNA-sensing transcriptional regulators for engineering genetic networks
    Julius B Lucks
    Department of Bioengineering, University of California, Berkeley, CA 94720, USA
    Proc Natl Acad Sci U S A 108:8617-22. 2011
    ..The combination of these three features within a single RNA-based regulatory mechanism has the potential to simplify the design and construction of genetic networks by directly propagating signals as RNA molecules...
  10. pmc Evolution, ecology and the engineered organism: lessons for synthetic biology
    Jeffrey M Skerker
    Department of Bioengineering, University of California, Berkeley, Berkeley, CA 94720, USA
    Genome Biol 10:114. 2009
    ..As the scope and complexity of synthetic biology grows, an understanding of evolution and ecology will be critical to its success...