Hossein Khiabanian

Summary

Affiliation: Columbia University
Country: USA

Publications

  1. pmc Differences in patient age distribution between influenza A subtypes
    Hossein Khiabanian
    Department of Biomedical Informatics and Center for Computational Biology and Bioinformatics, Columbia University College of Physicians and Surgeons, New York, New York, United States of America
    PLoS ONE 4:e6832. 2009
  2. pmc Reassortment patterns in Swine influenza viruses
    Hossein Khiabanian
    Department of Biomedical Informatics and Center for Computational Biology and Bioinformatics, Columbia University College of Physicians and Surgeons, New York, New York, United States of America
    PLoS ONE 4:e7366. 2009
  3. pmc ParMap, an algorithm for the identification of small genomic insertions and deletions in nextgen sequencing data
    Hossein Khiabanian
    Department of Biomedical Informatics, Columbia University College of Physicians and Surgeons, New York, NY, USA
    BMC Res Notes 3:147. 2010
  4. pmc Genetics of follicular lymphoma transformation
    Laura Pasqualucci
    Institute for Cancer Genetics, Columbia University, New York, NY 10032, USA Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY 10032, USA Department of Pathology and Cell Biology, Columbia University, New York, NY 10032, USA Electronic address
    Cell Rep 6:130-40. 2014
  5. pmc Discovering disease associations by integrating electronic clinical data and medical literature
    Antony B Holmes
    Department of Biomedical Informatics, Columbia University College of Physicians and Surgeons, New York, New York, United States of America
    PLoS ONE 6:e21132. 2011
  6. pmc Transcriptome reconstruction and annotation of cynomolgus and African green monkey
    Albert Lee
    Department of Biomedical Informatics, Columbia University College of Physicians and Surgeons, New York, New York, NY 10032, USA
    BMC Genomics 15:846. 2014
  7. pmc Recurrent mutations in epigenetic regulators, RHOA and FYN kinase in peripheral T cell lymphomas
    Teresa Palomero
    1 Institute for Cancer Genetics, Columbia University, New York, New York, USA 2 Department of Pathology, Columbia University Medical Center, New York, New York, USA 3
    Nat Genet 46:166-70. 2014
  8. pmc PHF6 mutations in T-cell acute lymphoblastic leukemia
    Pieter Van Vlierberghe
    Institute for Cancer Genetics, Columbia University Medical Center, New York, New York, USA
    Nat Genet 42:338-42. 2010
  9. pmc Analysis of the chronic lymphocytic leukemia coding genome: role of NOTCH1 mutational activation
    Giulia Fabbri
    Institute for Cancer Genetics and the Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY 10032, USA
    J Exp Med 208:1389-401. 2011

Collaborators

  • Raul Rabadan
  • Antony B Holmes
  • Laura Pasqualucci
  • Luca Arcaini
  • Maurilio Ponzoni
  • Feng Liu
  • Luca Laurenti
  • Charles G Mullighan
  • Vladimir Trifonov
  • Robin Foa
  • Davide Rossi
  • Gustavo Palacios
  • Adolfo Ferrando
  • Teresa Palomero
  • Albert Lee
  • Giulia Fabbri
  • Pieter Van Vlierberghe
  • Milagros Balbin
  • Oliver Elliott
  • Maddalena Allegretta
  • Mi Yeon Kim
  • Xiaoyu Jiang
  • Zachary Carpenter
  • Lucile CouronnĂ©
  • Elyse Nagle
  • Guo Yun Yu
  • Francesco Abate
  • Miguel A Piris
  • Alberto Ambesi-Impiombato
  • Arianne Perez-Garcia
  • Travis Warren
  • Izidore S Lossos
  • Elias Campo
  • Christian Bastard
  • Jeffrey Kugelman
  • J Erika Haydu
  • Olivier A Bernard
  • Concha Nicolas
  • Govind Bhagat
  • Valter Gattei
  • Marco Paulli
  • Luigi M Larocca
  • Anna Guarini
  • Daniela Capello
  • Sara Monti
  • Marco Fangazio
  • Francesco Bertoni
  • David Oscier
  • Silvia Rasi
  • Riccardo Dalla-Favera
  • Roberto Marasca
  • Gianluca Gaidano
  • Jing Ma
  • Francesco Forconi
  • Stefania Cresta
  • Ernesto Gargiulo
  • Adina Grunn
  • Barbara de Moerloose
  • Peter H Wiernik
  • Xiaopan Yao
  • Bruce Poppe
  • Jozef Gecz
  • Christine J Harrison
  • Sara Gonzalez-Garcia
  • Linda Zuurbier
  • Jules Meijerink
  • Maria L Toribio
  • Rob Pieters
  • Claire Schwab
  • Jacob M Rowe
  • Markus Pisecker
  • Mireia Castillo
  • Carlos Cordon-Cardo
  • Barbara Cauwelier
  • Frank Speleman
  • Sabine Strehl
  • Jan Philippe
  • Anton W Langerak
  • Nadine Van Roy
  • Joni Van der Meulen
  • Edwin Sonneveld
  • Tom Taghon
  • Yves Benoit
  • Elisabeth Paietta
  • Jean Soulier

Detail Information

Publications10

  1. pmc Differences in patient age distribution between influenza A subtypes
    Hossein Khiabanian
    Department of Biomedical Informatics and Center for Computational Biology and Bioinformatics, Columbia University College of Physicians and Surgeons, New York, New York, United States of America
    PLoS ONE 4:e6832. 2009
    ..Recently, a novel H1N1 virus has spread around the world. Preliminary reports suggest that this new strain causes symptomatic disease in the younger population in a similar fashion to the seasonal H1N1 strains...
  2. pmc Reassortment patterns in Swine influenza viruses
    Hossein Khiabanian
    Department of Biomedical Informatics and Center for Computational Biology and Bioinformatics, Columbia University College of Physicians and Surgeons, New York, New York, United States of America
    PLoS ONE 4:e7366. 2009
    ..Moreover, we find that one of the polymerase segments (PB1), reassorted in the strains responsible for the last two human pandemics, also reassorts frequently...
  3. pmc ParMap, an algorithm for the identification of small genomic insertions and deletions in nextgen sequencing data
    Hossein Khiabanian
    Department of Biomedical Informatics, Columbia University College of Physicians and Surgeons, New York, NY, USA
    BMC Res Notes 3:147. 2010
    ..This complicates the detection of genomic variations, especially, small insertions and deletions...
  4. pmc Genetics of follicular lymphoma transformation
    Laura Pasqualucci
    Institute for Cancer Genetics, Columbia University, New York, NY 10032, USA Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY 10032, USA Department of Pathology and Cell Biology, Columbia University, New York, NY 10032, USA Electronic address
    Cell Rep 6:130-40. 2014
    ..The genomic profile of tFL shares similarities with that of germinal center B cell-type de novo DLBCL but also displays unique combinations of altered genes with diagnostic and therapeutic implications. ..
  5. pmc Discovering disease associations by integrating electronic clinical data and medical literature
    Antony B Holmes
    Department of Biomedical Informatics, Columbia University College of Physicians and Surgeons, New York, New York, United States of America
    PLoS ONE 6:e21132. 2011
    ..In particular, we report a statistically significant association between Kawasaki disease and diagnosis of autistic disorder...
  6. pmc Transcriptome reconstruction and annotation of cynomolgus and African green monkey
    Albert Lee
    Department of Biomedical Informatics, Columbia University College of Physicians and Surgeons, New York, New York, NY 10032, USA
    BMC Genomics 15:846. 2014
    ..Unlike the human transcriptome, the transcriptomes of major NHP animal models are yet to be comprehensively annotated...
  7. pmc Recurrent mutations in epigenetic regulators, RHOA and FYN kinase in peripheral T cell lymphomas
    Teresa Palomero
    1 Institute for Cancer Genetics, Columbia University, New York, New York, USA 2 Department of Pathology, Columbia University Medical Center, New York, New York, USA 3
    Nat Genet 46:166-70. 2014
    ....
  8. pmc PHF6 mutations in T-cell acute lymphoblastic leukemia
    Pieter Van Vlierberghe
    Institute for Cancer Genetics, Columbia University Medical Center, New York, New York, USA
    Nat Genet 42:338-42. 2010
    ..Overall, these results identify PHF6 as a new X-linked tumor suppressor in T-ALL and point to a strong genetic interaction between PHF6 loss and aberrant expression of TLX transcription factors in the pathogenesis of this disease...
  9. pmc Analysis of the chronic lymphocytic leukemia coding genome: role of NOTCH1 mutational activation
    Giulia Fabbri
    Institute for Cancer Genetics and the Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY 10032, USA
    J Exp Med 208:1389-401. 2011
    ..These results provide initial data on the complexity of the CLL coding genome and identify a dysregulated pathway of diagnostic and therapeutic relevance...