Shaolin Wang

Summary

Affiliation: College of Veterinary Medicine
Country: USA

Publications

  1. pmc Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies
    Shaolin Wang
    The Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures and Program of Cell and Molecular Biosciences, Aquatic Genomics Unit, 203 Swingle Hall, Auburn University, Auburn, AL 36849, USA
    Genome Biol 11:R8. 2010
  2. pmc Quality assessment parameters for EST-derived SNPs from catfish
    Shaolin Wang
    The Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures and Program of Cell and Molecular Biosciences, Aquatic Genomics Unit, Auburn University, Auburn, AL 36849, USA
    BMC Genomics 9:450. 2008
  3. ncbi request reprint Microarray analysis of gene expression in the blue catfish liver reveals early activation of the MHC class I pathway after infection with Edwardsiella ictaluri
    Eric Peatman
    The Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures, Program of Cell and Molecular Biosciences, Aquatic Genomics Unit, Auburn University, Auburn, AL 36849, USA
    Mol Immunol 45:553-66. 2008
  4. pmc Comparative analysis of catfish BAC end sequences with the zebrafish genome
    Hong Liu
    The Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures and Program of Cell and Molecular Biosciences, Aquatic Genomics Unit, Auburn University, Auburn, AL 36849, USA
    BMC Genomics 10:592. 2009
  5. pmc Construction of genetic linkage maps and comparative genome analysis of catfish using gene-associated markers
    Huseyin Kucuktas
    Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures Program of Cell and Molecular Sciences, Auburn University, Auburn, AL 36849, USA
    Genetics 181:1649-60. 2009
  6. pmc Second-generation genetic linkage map of catfish and its integration with the BAC-based physical map
    Parichart Ninwichian
    The Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures, Program of Cell and Molecular Biosciences, Aquatic Genomics Unit, Auburn University, Auburn, Alabama 36849, USA
    G3 (Bethesda) 2:1233-41. 2012
  7. doi request reprint Molecular characterization and gene expression of the channel catfish ferritin H subunit after bacterial infection and iron treatment
    Hong Liu
    The Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures and Program of Cell and Molecular Biosciences, Aquatic Genomics Unit, Auburn University, Auburn, Alabama 36849, USA
    J Exp Zool A Ecol Genet Physiol 313:359-68. 2010
  8. pmc Towards the ictalurid catfish transcriptome: generation and analysis of 31,215 catfish ESTs
    Ping Li
    Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures and Program of Cell and Molecular Biosciences, Aquatic Genomics Unit, Auburn University, Auburn, AL 36849, USA
    BMC Genomics 8:177. 2007
  9. doi request reprint Alternative splicing in teleost fish genomes: same-species and cross-species analysis and comparisons
    Jianguo Lu
    The Fish Molecular Genetics and Biotechnology Laboratory, Aquatic Genomics Unit, Department of Fisheries and Allied Aquacultures and Program of Cell and Molecular Biosciences, Auburn University, Auburn, AL 36849, USA
    Mol Genet Genomics 283:531-9. 2010
  10. doi request reprint Microarray analysis of gene expression in eastern oyster (Crassostrea virginica) reveals a novel combination of antimicrobial and oxidative stress host responses after dermo (Perkinsus marinus) challenge
    Shaolin Wang
    Department of Fisheries and Allied Aquacultures, Auburn University, Auburn, AL 36849, USA
    Fish Shellfish Immunol 29:921-9. 2010

Detail Information

Publications22

  1. pmc Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies
    Shaolin Wang
    The Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures and Program of Cell and Molecular Biosciences, Aquatic Genomics Unit, 203 Swingle Hall, Auburn University, Auburn, AL 36849, USA
    Genome Biol 11:R8. 2010
    ..Prior to this project, only a limited EST resource from catfish was available for the purpose of SNP identification...
  2. pmc Quality assessment parameters for EST-derived SNPs from catfish
    Shaolin Wang
    The Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures and Program of Cell and Molecular Biosciences, Aquatic Genomics Unit, Auburn University, Auburn, AL 36849, USA
    BMC Genomics 9:450. 2008
    ..This project was designed to answer some of the questions relevant to quality assessment of EST-derived SNPs...
  3. ncbi request reprint Microarray analysis of gene expression in the blue catfish liver reveals early activation of the MHC class I pathway after infection with Edwardsiella ictaluri
    Eric Peatman
    The Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures, Program of Cell and Molecular Biosciences, Aquatic Genomics Unit, Auburn University, Auburn, AL 36849, USA
    Mol Immunol 45:553-66. 2008
    ..Our results add to the understanding of the teleost immune responses and provide a solid foundation for future functional characterization, genetic mapping, and QTL analysis of immunity-related genes from catfish...
  4. pmc Comparative analysis of catfish BAC end sequences with the zebrafish genome
    Hong Liu
    The Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures and Program of Cell and Molecular Biosciences, Aquatic Genomics Unit, Auburn University, Auburn, AL 36849, USA
    BMC Genomics 10:592. 2009
    ..This project was initiated to generate additional BAC end sequences and demonstrate their applications in comparative mapping in catfish...
  5. pmc Construction of genetic linkage maps and comparative genome analysis of catfish using gene-associated markers
    Huseyin Kucuktas
    Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures Program of Cell and Molecular Sciences, Auburn University, Auburn, AL 36849, USA
    Genetics 181:1649-60. 2009
    ..Given that determination of gene functions is difficult in nonmodel species such as catfish, functional genome analysis will have to rely heavily on the establishment of orthologies from model species...
  6. pmc Second-generation genetic linkage map of catfish and its integration with the BAC-based physical map
    Parichart Ninwichian
    The Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures, Program of Cell and Molecular Biosciences, Aquatic Genomics Unit, Auburn University, Auburn, Alabama 36849, USA
    G3 (Bethesda) 2:1233-41. 2012
    ..This integrated map should enable comparative studies with teleost model species as well as provide a framework for ordering and assembling whole-genome scaffolds...
  7. doi request reprint Molecular characterization and gene expression of the channel catfish ferritin H subunit after bacterial infection and iron treatment
    Hong Liu
    The Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures and Program of Cell and Molecular Biosciences, Aquatic Genomics Unit, Auburn University, Auburn, Alabama 36849, USA
    J Exp Zool A Ecol Genet Physiol 313:359-68. 2010
    ....
  8. pmc Towards the ictalurid catfish transcriptome: generation and analysis of 31,215 catfish ESTs
    Ping Li
    Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures and Program of Cell and Molecular Biosciences, Aquatic Genomics Unit, Auburn University, Auburn, AL 36849, USA
    BMC Genomics 8:177. 2007
    ....
  9. doi request reprint Alternative splicing in teleost fish genomes: same-species and cross-species analysis and comparisons
    Jianguo Lu
    The Fish Molecular Genetics and Biotechnology Laboratory, Aquatic Genomics Unit, Department of Fisheries and Allied Aquacultures and Program of Cell and Molecular Biosciences, Auburn University, Auburn, AL 36849, USA
    Mol Genet Genomics 283:531-9. 2010
    ..Our results and associated database should further our understanding of alternative splicing as an important functional and evolutionary mechanism in the genomes of teleost fish...
  10. doi request reprint Microarray analysis of gene expression in eastern oyster (Crassostrea virginica) reveals a novel combination of antimicrobial and oxidative stress host responses after dermo (Perkinsus marinus) challenge
    Shaolin Wang
    Department of Fisheries and Allied Aquacultures, Auburn University, Auburn, AL 36849, USA
    Fish Shellfish Immunol 29:921-9. 2010
    ..Potential histone-derived antimicrobial responses to P. marinus were also revealed in the gene expression profiles...
  11. doi request reprint Structure and expression of transferrin gene of channel catfish, Ictalurus punctatus
    Hong Liu
    Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures, Aquatic Genomics Unit, Auburn University, Auburn, AL 36849, USA
    Fish Shellfish Immunol 28:159-66. 2010
    ..Such induction was also found with co-injection of iron-dextran and E. ictaluri, while transferrin expression was not significantly induced with the injection of iron-dextran alone...
  12. doi request reprint Identification and characterization of matrix metalloproteinase-13 sequence structure and expression during embryogenesis and infection in channel catfish (Ictalurus punctatus)
    Yanliang Jiang
    The Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures, Program of Cell and Molecular Biosciences, Aquatic Genomics Unit, Auburn University, Auburn, AL 36849, USA
    Dev Comp Immunol 34:590-7. 2010
    ..During normal embryological development, MMP-13 expression was slightly increased in the first day post-fertilization and sharply up-regulated from 1-day post-fertilization through hatching...
  13. pmc Generation and analysis of ESTs from the eastern oyster, Crassostrea virginica Gmelin and identification of microsatellite and SNP markers
    Jonas Quilang
    The Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures and Program of Cell and Molecular Biosciences, Auburn University, Auburn, AL 36849, USA
    BMC Genomics 8:157. 2007
    ..The objectives of this study were to construct a normalized cDNA library for efficient EST analysis, to generate thousands of ESTs, and to analyze the ESTs for microsatellites and potential single nucleotide polymorphisms (SNPs)...
  14. pmc The catfish genome database cBARBEL: an informatic platform for genome biology of ictalurid catfish
    Jianguo Lu
    The Fish Molecular Genetics and Biotechnology Laboratory, Aquatic Genomics Unit, Department of Fisheries and Allied Aquacultures, Auburn University, Auburn, AL 36849, USA
    Nucleic Acids Res 39:D815-21. 2011
    ..cBARBEL can be accessed at http://catfishgenome.org...
  15. pmc Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array
    Shikai Liu
    The Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures and Program of Cell and Molecular Biosciences, Aquatic Genomics Unit, Auburn University, Auburn, AL 36849, USA
    BMC Genomics 12:53. 2011
    ..In addition, gene-associated SNPs could themselves be causative SNPs for traits. The objective of this project was to identify large numbers of gene-associated SNPs using high-throughput next generation sequencing...
  16. ncbi request reprint A BAC-based physical map of the channel catfish genome
    Peng Xu
    The Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures, and Program of Cell and Molecular Biosciences, Aquatic Genomics Unit, Auburn University, Auburn, AL 36849, USA
    Genomics 90:380-8. 2007
    ..The presented physical map should greatly enhance genome research in the catfish, particularly aiding in the identification of genomic regions containing genes underlying important performance traits...
  17. pmc Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus)
    Fei Chen
    The Fish Molecular Genetics and Biotechnology Laboratory, Aquatic Genomics Unit, Department of Fisheries and Allied Aquacultures and Program of Cell and Molecular Biosciences, Auburn University, Auburn, Alabama, United States of America
    PLoS ONE 5:e11546. 2010
    ..While increasingly common in model species, full-length cDNA resources in aquaculture species are scarce...
  18. pmc A pilot study for channel catfish whole genome sequencing and de novo assembly
    Yanliang Jiang
    The Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures, Program of Cell and Molecular Biosciences, Aquatic Genomics Unit, 203 Swingle Hall, Auburn University, Auburn, AL 36849, USA
    BMC Genomics 12:629. 2011
    ....
  19. ncbi request reprint Characterization of a BAC library from channel catfish Ictalurus punctatus: indications of high levels of chromosomal reshuffling among teleost genomes
    Shaolin Wang
    The Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures and Program of Cell and Molecular Biosciences, Aquatic Genomics Unit, Auburn University, Auburn, AL 36849, USA
    Mar Biotechnol (NY) 9:701-11. 2007
    ..This indicates that comparative genome analysis may provide shortcuts to genome analysis in catfish, especially for short genomic regions once the conserved syntenies are identified...
  20. ncbi request reprint Expression analysis of the acute phase response in channel catfish (Ictalurus punctatus) after infection with a Gram-negative bacterium
    Eric Peatman
    The Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures and Program of Cell and Molecular Biosciences, Aquatic Genomics Unit, Auburn University, 203 Swingle Hall, Auburn, AL 36849, USA
    Dev Comp Immunol 31:1183-96. 2007
    ..Independent testing of a selection of differentially expressed genes with real-time RT-PCR confirmed microarray results...
  21. doi request reprint NOD-like subfamily of the nucleotide-binding domain and leucine-rich repeat containing family receptors and their expression in channel catfish
    Zhenxia Sha
    The Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures, Program of Cell and Molecular Biosciences, Aquatic Genomics Unit, Auburn University, 203 Swingle Hall, Auburn, AL 36849 USA
    Dev Comp Immunol 33:991-9. 2009
    ....
  22. ncbi request reprint Repeat structure of the catfish genome: a genomic and transcriptomic assessment of Tc1-like transposon elements in channel catfish (Ictalurus punctatus)
    Samiran Nandi
    Department of Fisheries and Allied Aquacultures, The Fish Molecular Genetics and Biotechnology Laboratory, Program of Cell and Molecular Biosciences, Auburn University, Auburn, AL 36849, USA
    Genetica 131:81-90. 2007
    ..In spite of the existence of many types of Tc1-like sequences that are not yet able to be placed in clades with strong statistical support, it is clear that multiple families of Tc1-like elements exist in channel catfish...