Research Topics
| Karel SvobodaSummaryAffiliation: Cold Spring Harbor Laboratory Country: USA Publications
Research Grants
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Detail Information
Publications
The spread of Ras activity triggered by activation of a single dendritic spineChristopher D Harvey
Janelia Farm Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
Science 321:136-40. 2008..The spread of Ras-dependent signaling was necessary for the local regulation of the threshold for LTP induction. Thus, Ca2+-dependent synaptic signals can spread to couple multiple synapses on short stretches of dendrite...
Principles of two-photon excitation microscopy and its applications to neuroscienceKarel Svoboda
HHMI, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA
Neuron 50:823-39. 2006..Here we review the principles of 2PE microscopy, highlight recent applications, discuss its limitations, and point to areas for future research and development...
Rapid functional maturation of nascent dendritic spinesKaren Zito
Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA
Neuron 61:247-58. 2009..New spines reconstructed using electron microscopy made synapses. Our data support a model in which outgrowth and enlargement of nascent spines is tightly coupled to formation and maturation of glutamatergic synapses...
Geometric and functional organization of cortical circuitsGordon M G Shepherd
Howard Hughes Medical Institute, Cold Spring Harbor, New York 11724, USA
Nat Neurosci 8:782-90. 2005..A large plasticity potential appears to be incorporated into these circuits, allowing for functional 'tuning' with fixed axonal and dendritic arbor geometry...
Activity-dependent plasticity of the NMDA-receptor fractional Ca2+ currentAleksander Sobczyk
Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA
Neuron 53:17-24. 2007..Receptors in single spines depressed rapidly in an all-or-none manner. These adaptive changes in NMDA-R function likely play a critical role in metaplasticity and in stabilizing activity levels in neuronal networks with Hebbian synapses...
Cell type-specific structural plasticity of axonal branches and boutons in the adult neocortexVincenzo de Paola
Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA
Neuron 49:861-75. 2006..Retrospective electron microscopy revealed that new boutons make synapses. Our data suggest that structural plasticity of axonal branches and boutons contributes to the remodeling of specific functional circuits...
The functional asymmetry of auditory cortex is reflected in the organization of local cortical circuitsHYSELL V OVIEDO
Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA
Nat Neurosci 13:1413-20. 2010..Our results are consistent with the hypothesis that auditory cortical microcircuitry is specialized to the one-dimensional representation of frequency in the auditory cortex...
Circuit and plasticity defects in the developing somatosensory cortex of FMR1 knock-out miceIngrid Bureau
Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA
J Neurosci 28:5178-88. 2008..By 3 weeks, the strength of the L4-->L3 projection was similar to that of wild type. Our data indicate that Fmr1 shapes sensory cortical circuits during a developmental critical period...
Experience-dependent and cell-type-specific spine growth in the neocortexAnthony Holtmaat
Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA
Nature 441:979-83. 2006..Our data indicate that novel sensory experience drives the stabilization of new spines on subclasses of cortical neurons. These synaptic changes probably underlie experience-dependent remodelling of specific neocortical circuits...
Structural plasticity underlies experience-dependent functional plasticity of cortical circuitsLinda Wilbrecht
Howard Hughes Medical Institute HHMI, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA
J Neurosci 30:4927-32. 2010..Our data provide a causal link between new spine synapses and plasticity of adult cortical circuits and suggest that alphaCaMKII autophosphorylation plays a role in the stabilization but not formation of new spines...
Nonlinear [Ca2+] signaling in dendrites and spines caused by activity-dependent depression of Ca2+ extrusionVolker Scheuss
Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA
J Neurosci 26:8183-94. 2006..Depression of Ca2+ extrusion produces Ca2+ concentration dynamics that depend on the history of neuronal activity and therefore likely modulates the induction of synaptic plasticity...
Long-range neuronal circuits underlying the interaction between sensory and motor cortexTianyi Mao
Janelia Farm Research Campus, HHMI, 19700 Helix Drive, Ashburn, VA 20147, USA
Neuron 72:111-23. 2011..The cortico-cortical neurons in superficial layers of motor cortex thus couple motor and sensory signals and might mediate sensorimotor integration and motor learning...
Dendrodendritic synaptic signals in olfactory bulb granule cells: local spine boost and global low-threshold spikeVeronica Egger
Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA
J Neurosci 25:3521-30. 2005..The coincidence of local input and LTS in the spine resulted in summation of local and global Ca2+ signals, a dendritic computation that could endow granule cells with subthreshold associative plasticity...
Transient and persistent dendritic spines in the neocortex in vivoAnthony J G D Holtmaat
Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA
Neuron 45:279-91. 2005..In 6-month-old mice, spines turn over more slowly in visual compared to somatosensory cortex, possibly reflecting differences in the capacity for experience-dependent plasticity in these brain regions...
Monitoring neural activity and [Ca2+] with genetically encoded Ca2+ indicatorsThomas A Pologruto
Howard Hughes Medical Institute/Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA
J Neurosci 24:9572-9. 2004..We compared GECI fluorescence saturation with CaM Ca2+-dependent structural transitions. Our data suggest that GCaMP and Camgaroo2 report CaM structural transitions in the presence and absence of CaM-binding peptide, respectively...
Long-term, high-resolution imaging in the mouse neocortex through a chronic cranial windowAnthony Holtmaat
Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, NY, USA
Nat Protoc 4:1128-44. 2009..The entire dendritic and axonal arbor of individual neurons can be reconstructed...
Induction of spine growth and synapse formation by regulation of the spine actin cytoskeletonKaren Zito
Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA
Neuron 44:321-34. 2004..Synaptic strengths were reduced to compensate for extra synapses, keeping total synaptic input per neuron constant. Our data support a model in which synapse formation is promoted by actin-powered motility...
Rapid redistribution of synaptic PSD-95 in the neocortex in vivoNoah W Gray
Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA
PLoS Biol 4:e370. 2006..Our data suggest that individual PSDs compete for PSD-95 and that the kinetic interactions between PSD molecules and PSDs are tuned to regulate PSD size...
Interdigitated paralemniscal and lemniscal pathways in the mouse barrel cortexIngrid Bureau
Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, United States of America
PLoS Biol 4:e382. 2006..L2 neurons received input from lemniscal L3 cells and paralemniscal L5A cells spread over multiple columns. Our data indicate that lemniscal and paralemniscal information is segregated into interdigitated cortical layers...
Locally dynamic synaptic learning rules in pyramidal neuron dendritesChristopher D Harvey
Janelia Farm Research Campus, HHMI, Ashburn, Virginia 20147, USA
Nature 450:1195-200. 2007..These local interactions between neighbouring synapses support clustered plasticity models of memory storage and could allow for the binding of behaviourally linked information on the same dendritic branch...
Learning-related fine-scale specificity imaged in motor cortex circuits of behaving miceTakaki Komiyama
Janelia Farm Research Campus, HHMI, Ashburn, Virginia 20147, USA
Nature 464:1182-6. 2010..Our findings reveal a fine-scale and dynamic organization of the frontal cortex that probably underlies flexible behaviour...
Precise development of functional and anatomical columns in the neocortexIngrid Bureau
Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA
Neuron 42:789-801. 2004..Consistent with this, synaptic currents measured in layer 2/3 neurons at PND 8, just after these neurons ceased to migrate, revealed already spatially well-tuned receptive fields...
NMDA receptor subunit-dependent [Ca2+] signaling in individual hippocampal dendritic spinesAleksander Sobczyk
Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA
J Neurosci 25:6037-46. 2005..Our data suggest that individual spines can regulate the subunit composition of their NMDA-Rs and the effective fractional Ca2+ current through these receptors...
Laminar and columnar organization of ascending excitatory projections to layer 2/3 pyramidal neurons in rat barrel cortexGordon M G Shepherd
Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA
J Neurosci 25:5670-9. 2005....
The life cycle of Ca(2+) ions in dendritic spinesBernardo L Sabatini
Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA
Neuron 33:439-52. 2002..Furthermore, the kinetics of Ca(2+) sources governs the time course of [Ca(2+)] signals and may explain the selective activation of long-term synaptic potentiation (LTP) and long-term depression (LTD) by NMDA-R-mediated synaptic Ca(2+)...
Subcellular domain-restricted GABAergic innervation in primary visual cortex in the absence of sensory and thalamic inputsGraziella Di Cristo
Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA
Nat Neurosci 7:1184-6. 2004..Therefore, subcellular synapse targeting is independent of thalamic input and probably involves molecular labels and experience-independent forms of activity...
Characterization and subcellular targeting of GCaMP-type genetically-encoded calcium indicatorsTianyi Mao
Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, United States of America
PLoS ONE 3:e1796. 2008..Our results show that GCaMP2 is improved from the previous versions of GCaMP and may be suited to detect bursts of high-frequency action potentials and synaptic currents in vivo...
Diverse modes of axon elaboration in the developing neocortexCarlos Portera-Cailliau
Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA
PLoS Biol 3:e272. 2005..Given the identical layer 1 territory upon which CR and TC axons grow, the differences in their structure and dynamics likely reflect distinct intrinsic growth programs for axons of long projection neurons versus local interneurons...
Subliminal messages in hippocampal pyramidal cellsThomas G Oertner
Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, 1 Bungtown Rd, Cold Spring Harbor, NY 11724, USA
J Physiol 543:397. 2002
Mechanisms of lateral inhibition in the olfactory bulb: efficiency and modulation of spike-evoked calcium influx into granule cellsVeronica Egger
Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA
J Neurosci 23:7551-8. 2003..The implication of a transiently inactivating calcium channel in synaptic release from granule cells suggests novel mechanisms for the regulation of lateral inhibition in the olfactory bulb...
Plasticity of calcium channels in dendritic spinesRyohei Yasuda
Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, 1 Bungtown Road Cold Spring Harbor, New York 11724, USA
Nat Neurosci 6:948-55. 2003..Given that L-type VSCCs do not contribute measurably to Ca2+ influx in spines, they must activate downstream effectors either directly through voltage-dependent conformational changes or via [Ca2+] microdomains...
A proposal for a coordinated effort for the determination of brainwide neuroanatomical connectivity in model organisms at a mesoscopic scaleJason W Bohland
Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA
PLoS Comput Biol 5:e1000334. 2009..We estimate that the mouse connectivity project could be completed within five years with a comparatively modest budget...
Stereotyped odor-evoked activity in the mushroom body of Drosophila revealed by green fluorescent protein-based Ca2+ imagingYalin Wang
Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA
J Neurosci 24:6507-14. 2004..These results indicate that odor-evoked activity can have remarkable spatial specificity in the MB...
Facilitation at single synapses probed with optical quantal analysisThomas G Oertner
Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, New York 11724, USA
Nat Neurosci 5:657-64. 2002....
Long-term in vivo imaging of experience-dependent synaptic plasticity in adult cortexJoshua T Trachtenberg
Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA
Nature 420:788-94. 2002..Our measurements suggest that sensory experience drives the formation and elimination of synapses and that these changes might underlie adaptive remodelling of neural circuits...
Experience-dependent changes in basal dendritic branching of layer 2/3 pyramidal neurons during a critical period for developmental plasticity in rat barrel cortexMiguel Maravall
Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA
Cereb Cortex 14:655-64. 2004..Deprivation initiated at PND 15 had no effect on basal branching measured at PND 20. Thus the spatial organization of secondary dendritic branching is experience-dependent and shares a critical period with receptive field plasticity...
The number of glutamate receptors opened by synaptic stimulation in single hippocampal spinesEsther A Nimchinsky
Howard Hughes Medical Institute, The Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA
J Neurosci 24:2054-64. 2004..Our measurements further demonstrate that optical recordings can be used to study single receptors in intact systems...
Imaging calcium concentration dynamics in small neuronal compartmentsRyohei Yasuda
Howard Hughes Medical Institute, The Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA
Sci STKE 2004:pl5. 2004..Here, we describe techniques that are optimized for 2-photon imaging of [Ca2+] dynamics in small compartments such as dendrites and dendritic spines...
Activity-dependent synaptogenesis in the adult Mammalian cortexKaren Zito
Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, NY 11724, USA
Neuron 35:1015-7. 2002..Together with progress imaging synapses in vivo, the stage appears set for advances in understanding the dynamics and mechanisms of experience-dependent synaptogenesis...
Development of intrinsic properties and excitability of layer 2/3 pyramidal neurons during a critical period for sensory maps in rat barrel cortexMiguel Maravall
Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA
J Neurophysiol 92:144-56. 2004..Other measures of excitability, including I-f curves and passive membrane properties, were affected by development but unaffected by whisker deprivation...
Experience strengthening transmission by driving AMPA receptors into synapsesTakuya Takahashi
Jones Laboratory, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA
Science 299:1585-8. 2003..In general, synaptic incorporation of AMPA-Rs in vivo conforms to rules identified in vitro and contributes to plasticity driven by natural stimuli in the mammalian brain...
Circuit analysis of experience-dependent plasticity in the developing rat barrel cortexGordon M G Shepherd
Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA
Neuron 38:277-89. 2003..These results reveal competitive interactions between barrel and septal circuits in the establishment of precise intracortical circuits...
Structure and function of dendritic spinesEsther A Nimchinsky
Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA
Annu Rev Physiol 64:313-53. 2002..In particular, recent work has highlighted that spines are highly specialized compartments for rapid large-amplitude Ca(2+) signals underlying the induction of synaptic plasticity...
ScanImage: flexible software for operating laser scanning microscopesThomas A Pologruto
Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA
Biomed Eng Online 2:13. 2003..A major impediment to custom design is the difficulty of building custom data acquisition hardware and writing the complex software required to run the laser scanning microscope...
Supersensitive Ras activation in dendrites and spines revealed by two-photon fluorescence lifetime imagingRyohei Yasuda
Howard Hughes Medical Institute
Nat Neurosci 9:283-91. 2006..The Ras pathway therefore functions as a supersensitive threshold detector for neural activity and Ca(2+) concentration...
Sparse optical microstimulation in barrel cortex drives learned behaviour in freely moving miceDaniel Huber
Howard Hughes Medical Institute, Janelia Farm Research Campus, Ashburn, Virginia 20147, USA
Nature 451:61-4. 2008..Our results show that perceptual decisions and learning can be driven by extremely brief epochs of cortical activity in a sparse subset of supragranular cortical pyramidal neurons...
Do spines and dendrites distribute dye evenly?Karel Svoboda
Trends Neurosci 27:445-6. 2004
Novel approaches to monitor and manipulate single neurons in vivoMichael Brecht
Department of Neuroscience, Erasmus Medical Center, University Medical Center Rotterdam, 3015 DR Rotterdam, The Netherlands
J Neurosci 24:9223-7. 2004
Rapid and reversible chemical inactivation of synaptic transmission in genetically targeted neuronsAlla Y Karpova
Howard Hughes Medical Institute, USA
Neuron 48:727-35. 2005..MISTs allow for specific, inducible, and reversible lesions in neuronal circuits and may provide treatment of disorders associated with neuronal hyperactivity...
An image analysis algorithm for dendritic spinesIngrid Y Y Koh
Department of Applied Mathematics and Statistics, State University of New York at Stony Brook, Stony Brook, NY 11794 3600, USA
Neural Comput 14:1283-310. 2002..Automated analysis of dendritic spine morphology will enable objective analysis of large morphological data sets. The approaches presented here are generalizable to other aspects of neuronal morphology...
Channelrhodopsin-2-assisted circuit mapping of long-range callosal projectionsLeopoldo Petreanu
Howard Hughes Medical Institute, Janelia Farm Research Campus, 19700 Helix Drive, Ashburn, Virginia 20147, USA
Nat Neurosci 10:663-8. 2007..In both hemispheres the L2/3-to-L5 projection is stronger than the L2/3-to-L2/3 projection. Our results suggest that laminar specificity may be identical for local and long-range cortical projections...
Research Grants
- Optical Studies of Single Hippocampal SynapsesKarel Svoboda; Fiscal Year: 2006..We hope to end up with a core description of the function and plasticity of single synapses. ..
- Optical Studies of Single Hippocampal SynapsesKarel Svoboda; Fiscal Year: 2007..We hope to end up with a core description of the function and plasticity of single synapses. ..
- DENDRITIC FUNCTION IN NEOCORTEX IN VIVOKarel Svoboda; Fiscal Year: 2007..abstract_text> ..
- Molecules for inducibly modulating synaptic functionKarel Svoboda; Fiscal Year: 2007..3.) Well-characterized systems will be introduced into subpopulations of neurons in mice using viruses and transgenic approaches. Systems will be tested in vivo using intrinsic signal imaging and electrophysiological techniques. ..
- Open source software for laser scanning microscopyKarel Svoboda; Fiscal Year: 2007..We believe that Scanlmage will facilitate exciting biological discovery in numerous laboratories. ..
- Optical Studies of Single Hippocampal SynapsesKarel Svoboda; Fiscal Year: 2003..We hope to end up with a core description of the function and plasticity of single synapses. ..
- DENDRITIC FUNCTION IN NEOCORTEX IN VIVOKarel Svoboda; Fiscal Year: 2003..These studies will be helped by improvements to existing instrumentation for TPLSM-based physiology in vivo. ..
