Michael C Schatz

Summary

Affiliation: Cold Spring Harbor Laboratory
Country: USA

Publications

  1. pmc The rise of a digital immune system
    Michael C Schatz
    Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, 11724, USA
    Gigascience 1:4. 2012
  2. pmc Hawkeye and AMOS: visualizing and assessing the quality of genome assemblies
    Michael C Schatz
    Cold Spring Harbor, New York, NY 11724, USA
    Brief Bioinform 14:213-24. 2013
  3. pmc Current challenges in de novo plant genome sequencing and assembly
    Michael C Schatz
    Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA
    Genome Biol 13:243. 2012
  4. pmc Quake: quality-aware detection and correction of sequencing errors
    David R Kelley
    Center for Bioinformatics and Computational Biology, Institute for Advanced Computer Studies, and Department of Computer Science, University of Maryland, College Park, MD 20742, USA
    Genome Biol 11:R116. 2010
  5. pmc The missing graphical user interface for genomics
    Michael C Schatz
    Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA
    Genome Biol 11:128. 2010
  6. pmc Genomic dark matter: the reliability of short read mapping illustrated by the genome mappability score
    Hayan Lee
    Department of Computer Science, Stony Brook University, Stony Brook, NY, USA
    Bioinformatics 28:2097-105. 2012
  7. pmc Genotyping in the cloud with Crossbow
    James Gurtowski
    Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA
    Curr Protoc Bioinformatics . 2012

Detail Information

Publications9

  1. pmc The rise of a digital immune system
    Michael C Schatz
    Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, 11724, USA
    Gigascience 1:4. 2012
    ....
  2. pmc Hawkeye and AMOS: visualizing and assessing the quality of genome assemblies
    Michael C Schatz
    Cold Spring Harbor, New York, NY 11724, USA
    Brief Bioinform 14:213-24. 2013
    ..Hawkeye and AMOS are available open source at http://amos.sourceforge.net...
  3. pmc Current challenges in de novo plant genome sequencing and assembly
    Michael C Schatz
    Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA
    Genome Biol 13:243. 2012
    ..Genome sequencing is now affordable, but assembling plant genomes de novo remains challenging. We assess the state of the art of assembly and review the best practices for the community...
  4. pmc Quake: quality-aware detection and correction of sequencing errors
    David R Kelley
    Center for Bioinformatics and Computational Biology, Institute for Advanced Computer Studies, and Department of Computer Science, University of Maryland, College Park, MD 20742, USA
    Genome Biol 11:R116. 2010
    ..Quake can be used for any size project, including more than one billion human reads, and is freely available as open source software from http://www.cbcb.umd.edu/software/quake...
  5. pmc The missing graphical user interface for genomics
    Michael C Schatz
    Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA
    Genome Biol 11:128. 2010
    ..The underlying data analysis tools can be almost any piece of software, written in any language, but all their complexity is neatly hidden inside of Galaxy, allowing users to focus on scientific rather than technical questions...
  6. pmc Genomic dark matter: the reliability of short read mapping illustrated by the genome mappability score
    Hayan Lee
    Department of Computer Science, Stony Brook University, Stony Brook, NY, USA
    Bioinformatics 28:2097-105. 2012
    ..The GMS is a weighted probability that any read could be unambiguously mapped to a given position and thus measures the overall composition of the genome itself...
  7. pmc Genotyping in the cloud with Crossbow
    James Gurtowski
    Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA
    Curr Protoc Bioinformatics . 2012
    ....