P Brandon Matheny

Summary

Affiliation: Clark University
Country: USA

Publications

  1. ncbi Improving phylogenetic inference of mushrooms with RPB1 and RPB2 nucleotide sequences (Inocybe; Agaricales)
    P Brandon Matheny
    Biology Department, Box 351330, University of Washington, Seattle, WA 98195 5325, USA
    Mol Phylogenet Evol 35:1-20. 2005
  2. ncbi Major clades of Agaricales: a multilocus phylogenetic overview
    P Brandon Matheny
    Biology Department, Clark University, Worcester, Massachusetts 01610, USA
    Mycologia 98:982-95. 2006
  3. ncbi Contributions of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi)
    P Brandon Matheny
    Biology Department, Clark University, 950 Main St, Worcester, MA 01610, USA
    Mol Phylogenet Evol 43:430-51. 2007
  4. ncbi Taxonomy of displaced species of Tubaria
    P Brandon Matheny
    Clark University, Biology Department, 950 Main Street, Worcester, Massachusetts 01610, USA
    Mycologia 99:569-85. 2007
  5. pmc The relative ages of ectomycorrhizal mushrooms and their plant hosts estimated using Bayesian relaxed molecular clock analyses
    David S Hibbett
    Biology Department, Clark University, Worcester, Massachusetts 01610, USA
    BMC Biol 7:13. 2009
  6. ncbi Amylocorticiales ord. nov. and Jaapiales ord. nov.: early diverging clades of agaricomycetidae dominated by corticioid forms
    Manfred Binder
    Clark University, Biology Department, Lasry Center for Biosciences, 15 Maywood Street, Worcester, Massachusetts 01601, USA
    Mycologia 102:865-80. 2010
  7. doi Inocybe section Rimosae in Utah: phylogenetic affinities and new species
    Bradley R Kropp
    Biology Department, Utah State University, Logan, UT, USA
    Mycologia 105:728-47. 2013
  8. ncbi New species of Inocybe from Dicymbe forests of Guyana
    P Brandon Matheny
    Botany Department, University of Washington, Seattle, Washington 98195, USA
    Mycol Res 107:495-505. 2003
  9. ncbi A higher-level phylogenetic classification of the Fungi
    David S Hibbett
    Biology Department, Clark University, Worcester, MA 01610, USA
    Mycol Res 111:509-47. 2007
  10. ncbi The cantharelloid clade: dealing with incongruent gene trees and phylogenetic reconstruction methods
    Jean Marc Moncalvo
    Department of Natural History, Royal Ontario Museum, University of Toronto, Canada
    Mycologia 98:937-48. 2006

Detail Information

Publications14

  1. ncbi Improving phylogenetic inference of mushrooms with RPB1 and RPB2 nucleotide sequences (Inocybe; Agaricales)
    P Brandon Matheny
    Biology Department, Box 351330, University of Washington, Seattle, WA 98195 5325, USA
    Mol Phylogenet Evol 35:1-20. 2005
    ..These results also suggest the family Crepiodataceae sensu stricto is sister to Inocybe. Recognition of Inocybe at the family level, the Inocybaceae, is recommended...
  2. ncbi Major clades of Agaricales: a multilocus phylogenetic overview
    P Brandon Matheny
    Biology Department, Clark University, Worcester, Massachusetts 01610, USA
    Mycologia 98:982-95. 2006
    ..A family-based phylogenetic classification is sketched for the Agaricales, in which 30 families, four unplaced tribes and two informally named clades are recognized...
  3. ncbi Contributions of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi)
    P Brandon Matheny
    Biology Department, Clark University, 950 Main St, Worcester, MA 01610, USA
    Mol Phylogenet Evol 43:430-51. 2007
    ..Strong support is also recovered for the basal position of the Dacrymycetales in the Hymenomycetidae and paraphyly of the Exobasidiomycetidae...
  4. ncbi Taxonomy of displaced species of Tubaria
    P Brandon Matheny
    Clark University, Biology Department, 950 Main Street, Worcester, Massachusetts 01610, USA
    Mycologia 99:569-85. 2007
    ..Four new combinations are proposed, and one new species, T. bispora, is described as new from Costa Rica and Martinique. A lectotype is designated for Pholiota serrulata...
  5. pmc The relative ages of ectomycorrhizal mushrooms and their plant hosts estimated using Bayesian relaxed molecular clock analyses
    David S Hibbett
    Biology Department, Clark University, Worcester, Massachusetts 01610, USA
    BMC Biol 7:13. 2009
    ..As we were primarily interested in the relative ages of the plants and fungi, we did not attempt to calibrate the molecular clock using the very limited fossil record of Agaricomycetes...
  6. ncbi Amylocorticiales ord. nov. and Jaapiales ord. nov.: early diverging clades of agaricomycetidae dominated by corticioid forms
    Manfred Binder
    Clark University, Biology Department, Lasry Center for Biosciences, 15 Maywood Street, Worcester, Massachusetts 01601, USA
    Mycologia 102:865-80. 2010
    ..The Jaapiales is supported as the sister group of the remainder of the Agaricomycetidae, suggesting that the greatest radiation of pileate-stipitate mushrooms resulted from the elaboration of resupinate ancestors...
  7. doi Inocybe section Rimosae in Utah: phylogenetic affinities and new species
    Bradley R Kropp
    Biology Department, Utah State University, Logan, UT, USA
    Mycologia 105:728-47. 2013
    ..Many of these probably correspond to undescribed species. A key to species of section Rimosae sensu lato from Utah is provided together with illustrations of the eight species found in the state...
  8. ncbi New species of Inocybe from Dicymbe forests of Guyana
    P Brandon Matheny
    Botany Department, University of Washington, Seattle, Washington 98195, USA
    Mycol Res 107:495-505. 2003
    ..The new species are I. ayangannae, I. epidendron, I. lilacinosquamosa and I. pulchella. A dichotomous key, morphological descriptions, illustrations, taxonomic commentary, and a discussion of Inocybe in the tropics, are provided...
  9. ncbi A higher-level phylogenetic classification of the Fungi
    David S Hibbett
    Biology Department, Clark University, Worcester, MA 01610, USA
    Mycol Res 111:509-47. 2007
    ..Several genera of 'basal' Fungi of uncertain position are not placed in any higher taxa, including Basidiobolus, Caulochytrium, Olpidium, and Rozella...
  10. ncbi The cantharelloid clade: dealing with incongruent gene trees and phylogenetic reconstruction methods
    Jean Marc Moncalvo
    Department of Natural History, Royal Ontario Museum, University of Toronto, Canada
    Mycologia 98:937-48. 2006
    ..Our attempt to reconstruct a "supertree" from tree topologies resulting from separate analyses that avoided phylogenetic reconstruction problems associated with missing data and/or unalignable sequences proved unsuccessful...
  11. ncbi An overview of the higher level classification of Pucciniomycotina based on combined analyses of nuclear large and small subunit rDNA sequences
    M Catherine Aime
    USDA ARS, Systematic Botany and Mycology Lab, Beltsville, Maryland 20705, USA
    Mycologia 98:896-905. 2006
    ....
  12. doi The mushroom family Psathyrellaceae: evidence for large-scale polyphyly of the genus Psathyrella
    Mahajabeen Padamsee
    Department of Plant Biology, University of Minnesota, 250 Biological Sciences Center, 1445 Gortner Avenue, Saint Paul, MN 55108, USA
    Mol Phylogenet Evol 46:415-29. 2008
    ..These results were interpreted in light of the two major taxonomic treatments of Psathyrella and revealed substantial inconsistencies between the molecular- and morphology-derived inferences of relationships...
  13. ncbi Phylogenetic relationships of Auriculoscypha based on ultrastructural and molecular studies
    T K Arun Kumar
    Department of Plant Biology, University of Minnesota, 1445 Gortner Avenue, St Paul, MN 55108 1095, USA
    Mycol Res 111:268-74. 2007
    ..The placement of Auriculoscypha in the Platygloeales can no longer be justified and both ultrastructural and molecular evidence strongly support the placement of Auriculoscypha in the Septobasidiales...
  14. ncbi Reconstructing the early evolution of Fungi using a six-gene phylogeny
    Timothy Y James
    Department of Biology, Duke University, Durham, North Carolina 27708 0338, USA
    Nature 443:818-22. 2006
    ..The enigmatic microsporidia seem to be derived from an endoparasitic chytrid ancestor similar to Rozella allomycis, on the earliest diverging branch of the fungal phylogenetic tree...