David S Hibbett

Summary

Affiliation: Clark University
Country: USA

Publications

  1. doi Fungal systematics: is a new age of enlightenment at hand?
    David S Hibbett
    The Biology Department, Clark University, Worcester, Massachusetts 01610, USA
    Nat Rev Microbiol 11:129-33. 2013
  2. ncbi A higher-level phylogenetic classification of the Fungi
    David S Hibbett
    Biology Department, Clark University, Worcester, MA 01610, USA
    Mycol Res 111:509-47. 2007
  3. pmc The relative ages of ectomycorrhizal mushrooms and their plant hosts estimated using Bayesian relaxed molecular clock analyses
    David S Hibbett
    Biology Department, Clark University, Worcester, Massachusetts 01610, USA
    BMC Biol 7:13. 2009
  4. ncbi A phylogenetic overview of the Agaricomycotina
    David S Hibbett
    Biology Department, Clark University, Worcester, Massachusetts 01610, USA
    Mycologia 98:917-25. 2006
  5. ncbi Major clades of Agaricales: a multilocus phylogenetic overview
    P Brandon Matheny
    Biology Department, Clark University, Worcester, Massachusetts 01610, USA
    Mycologia 98:982-95. 2006
  6. ncbi Contributions of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi)
    P Brandon Matheny
    Biology Department, Clark University, 950 Main St, Worcester, MA 01610, USA
    Mol Phylogenet Evol 43:430-51. 2007
  7. ncbi Toward a phylogenetic classification of the leotiomycetes based on rDNA data
    Zheng Wang
    Department of Biology, Clark University, Worcester, Massachusetts 01610, USA
    Mycologia 98:1065-75. 2006
  8. pmc Characterization of three mnp genes of Fomitiporia mediterranea and report of additional class II peroxidases in the order hymenochaetales
    Ingo Morgenstern
    Clark University, Department of Biology, Worcester, Massachusetts 01610, USA
    Appl Environ Microbiol 76:6431-40. 2010
  9. pmc Horizontal transfer of a nitrate assimilation gene cluster and ecological transitions in fungi: a phylogenetic study
    Jason C Slot
    Department of Biology, Clark University, Worcester, Massachusetts, United States of America
    PLoS ONE 2:e1097. 2007
  10. doi Diversity and evolution of ectomycorrhizal host associations in the Sclerodermatineae (Boletales, Basidiomycota)
    Andrew W Wilson
    Department of Biology, Clark University, Worcester, MA 01610, USA
    New Phytol 194:1079-95. 2012

Detail Information

Publications35

  1. doi Fungal systematics: is a new age of enlightenment at hand?
    David S Hibbett
    The Biology Department, Clark University, Worcester, Massachusetts 01610, USA
    Nat Rev Microbiol 11:129-33. 2013
    ..The next, and more difficult, step will be to develop community standards for sequence-based classification...
  2. ncbi A higher-level phylogenetic classification of the Fungi
    David S Hibbett
    Biology Department, Clark University, Worcester, MA 01610, USA
    Mycol Res 111:509-47. 2007
    ..Several genera of 'basal' Fungi of uncertain position are not placed in any higher taxa, including Basidiobolus, Caulochytrium, Olpidium, and Rozella...
  3. pmc The relative ages of ectomycorrhizal mushrooms and their plant hosts estimated using Bayesian relaxed molecular clock analyses
    David S Hibbett
    Biology Department, Clark University, Worcester, Massachusetts 01610, USA
    BMC Biol 7:13. 2009
    ..As we were primarily interested in the relative ages of the plants and fungi, we did not attempt to calibrate the molecular clock using the very limited fossil record of Agaricomycetes...
  4. ncbi A phylogenetic overview of the Agaricomycotina
    David S Hibbett
    Biology Department, Clark University, Worcester, Massachusetts 01610, USA
    Mycologia 98:917-25. 2006
    ..Genome sequences from other major lineages, especially the early diverging clades, are needed to resolve the most ancient nodes and to assess deep homology in ecological characters in the Agaricomycotina...
  5. ncbi Major clades of Agaricales: a multilocus phylogenetic overview
    P Brandon Matheny
    Biology Department, Clark University, Worcester, Massachusetts 01610, USA
    Mycologia 98:982-95. 2006
    ..A family-based phylogenetic classification is sketched for the Agaricales, in which 30 families, four unplaced tribes and two informally named clades are recognized...
  6. ncbi Contributions of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi)
    P Brandon Matheny
    Biology Department, Clark University, 950 Main St, Worcester, MA 01610, USA
    Mol Phylogenet Evol 43:430-51. 2007
    ..Strong support is also recovered for the basal position of the Dacrymycetales in the Hymenomycetidae and paraphyly of the Exobasidiomycetidae...
  7. ncbi Toward a phylogenetic classification of the leotiomycetes based on rDNA data
    Zheng Wang
    Department of Biology, Clark University, Worcester, Massachusetts 01610, USA
    Mycologia 98:1065-75. 2006
    ..Sequence data of rDNA regions are not adequate to resolve the relationships among major groups of the Leotiomycetes...
  8. pmc Characterization of three mnp genes of Fomitiporia mediterranea and report of additional class II peroxidases in the order hymenochaetales
    Ingo Morgenstern
    Clark University, Department of Biology, Worcester, Massachusetts 01610, USA
    Appl Environ Microbiol 76:6431-40. 2010
    ....
  9. pmc Horizontal transfer of a nitrate assimilation gene cluster and ecological transitions in fungi: a phylogenetic study
    Jason C Slot
    Department of Biology, Clark University, Worcester, Massachusetts, United States of America
    PLoS ONE 2:e1097. 2007
    ..reesei in a new niche. Horizontal transmission of this cluster of functionally integrated genes supports the "selfish operon" hypothesis for maintenance of gene clusters...
  10. doi Diversity and evolution of ectomycorrhizal host associations in the Sclerodermatineae (Boletales, Basidiomycota)
    Andrew W Wilson
    Department of Biology, Clark University, Worcester, MA 01610, USA
    New Phytol 194:1079-95. 2012
    ..This suggests that ectomycorrhizal generalists have greater dispersal capabilities than specialists...
  11. doi The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes
    Dimitrios Floudas
    Biology Department, Clark University, Worcester, MA 01610, USA
    Science 336:1715-9. 2012
    ..Molecular clock analyses suggest that the origin of lignin degradation might have coincided with the sharp decrease in the rate of organic carbon burial around the end of the Carboniferous period...
  12. ncbi Diversification of NRT2 and the origin of its fungal homolog
    Jason C Slot
    Department of Biology, Clark University, MA, USA
    Mol Biol Evol 24:1731-43. 2007
    ..Our analyses also suggest that there has been a horizontal transfer of nrt2 from a basidiomycete fungus to an ascomycete fungus and reveal a duplication of nrt2 in the ectomycorrhizal mushroom genus, Hebeloma...
  13. ncbi Molecular systematics and biological diversification of Boletales
    Manfred Binder
    Clark University, Biology Department, Lasry Center for Bioscience, Worcester, Massachusetts 01610 1477, USA
    Mycologia 98:971-81. 2006
    ..We performed ancestral state reconstruction with BayesMultiState, which suggested that the ancestor of the Boletales was a resupinate or polyporoid saprotrophic fungus, producing a brown-rot...
  14. doi Phylogenetic overview of the Boletineae
    Mitchell E Nuhn
    Dept of Biology, Clark University, 950 Main St, Worcester, MA 01610, USA
    Fungal Biol 117:479-511. 2013
    ....
  15. pmc Evolution of complex fruiting-body morphologies in homobasidiomycetes
    David S Hibbett
    Biology Department, Clark University, 950 Main Street, Worcester, MA 01610, USA
    Proc Biol Sci 269:1963-9. 2002
    ..A null model of morphological evolution, in which there is no asymmetry in transformation rates, was rejected. These results suggest that there is a 'driven' trend towards the evolution of complex forms in homobasidiomycetes...
  16. doi Molecular phylogenetics of the Gloeophyllales and relative ages of clades of Agaricomycotina producing a brown rot
    Ricardo Garcia-Sandoval
    Biology Department, Clark University, Worcester, Massachusetts 01610, USA
    Mycologia 103:510-24. 2011
    ..White rot and resupinate fruiting bodies appear to be plesiomorphic in Gloeophyllales. Relaxed molecular clock analyses suggest that the Gloeophyllales arose in the Cretaceous, after the origin of Pinaceae...
  17. ncbi Evolution of helotialean fungi (Leotiomycetes, Pezizomycotina): a nuclear rDNA phylogeny
    Zheng Wang
    Department of Biology, Clark University, 950 Main Street, Worcester, MA 01610, USA
    Mol Phylogenet Evol 41:295-312. 2006
    ....
  18. ncbi Convergent evolution of sequestrate forms in Amanita under Mediterranean climate conditions
    Alfredo Justo
    Biology Department, Clark University, 950 Main Street, Worcester, Massachusetts 01610, USA
    Mycologia 102:675-88. 2010
    ..A new species of Torrendia from Australia was discovered during the revision of the collections originally identified as T. arenaria and is described here as Amanita pseudoinculta...
  19. doi Toward genome-enabled mycology
    David S Hibbett
    Biology Department, Clark University, Worcester, Massachusetts 01610
    Mycologia 105:1339-49. 2013
    ....
  20. doi Phylogenetic and phylogenomic overview of the Polyporales
    Manfred Binder
    Biology Department, Clark University, 950 Main Street, Worcester, Massachusetts 01610, and CBS KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT, Utrecht, The Netherlands
    Mycologia 105:1350-73. 2013
    ..The most promising candidate single-copy genes are presented, and nodes in the Polyporales phylogeny critical for the suprageneric taxonomy of the order are identified and discussed. ..
  21. ncbi After the gold rush, or before the flood? Evolutionary morphology of mushroom-forming fungi (Agaricomycetes) in the early 21st century
    David S Hibbett
    Biology Department, Clark University, Worcester, MA 01610, USA
    Mycol Res 111:1001-18. 2007
    ..Modern approaches, including comparative phylogenetic analyses and developmental studies, have the potential to yield novel insights into both the macroevolutionary processes and cellular mechanisms of fungal morphological evolution...
  22. ncbi Higher-level phylogenetic relationships of Homobasidiomycetes (mushroom-forming fungi) inferred from four rDNA regions
    Manfred Binder
    Department of Biology, Clark University, 950 Main St, Worcester, Massachusetts 01568, USA
    Mol Phylogenet Evol 22:76-90. 2002
    ..Nevertheless, the backbone of the homobasidiomycete phylogeny, and the internal structure of several clades, remain poorly resolved...
  23. doi Effects of gasteroid fruiting body morphology on diversification rates in three independent clades of fungi estimated using binary state speciation and extinction analysis
    Andrew W Wilson
    Department of Biology, Clark University, Worcester, Massachusetts 01610, USA
    Evolution 65:1305-22. 2011
    ..The low frequency of gasteroid forms in the Agaricomycetes as a whole may reflect the recent origins of many gasteroid lineages...
  24. ncbi Amylocorticiales ord. nov. and Jaapiales ord. nov.: early diverging clades of agaricomycetidae dominated by corticioid forms
    Manfred Binder
    Clark University, Biology Department, Lasry Center for Biosciences, 15 Maywood Street, Worcester, Massachusetts 01601, USA
    Mycologia 102:865-80. 2010
    ..The Jaapiales is supported as the sister group of the remainder of the Agaricomycetidae, suggesting that the greatest radiation of pileate-stipitate mushrooms resulted from the elaboration of resupinate ancestors...
  25. ncbi Automated phylogenetic taxonomy: an example in the homobasidiomycetes (mushroom-forming fungi)
    David S Hibbett
    Biology Department, Clark University, Worcester, Massachusetts 01610, USA
    Syst Biol 54:660-8. 2005
  26. doi Molecular evolution and diversity of lignin degrading heme peroxidases in the Agaricomycetes
    Ingo Morgenstern
    Department of Biology, Clark University, 950 Main Street, Worcester, MA 01610, USA
    J Mol Evol 66:243-57. 2008
    ..Our study includes the first reports of partial sequences for MnPs in the Hymenochaetales and Corticiales...
  27. doi Phylogeny of the Pluteaceae (Agaricales, Basidiomycota): taxonomy and character evolution
    Alfredo Justo
    Biology Department, Clark University, 950 Main St, Worcester, MA 01610, USA
    Fungal Biol 115:1-20. 2011
    ..Pluteus, with the metuloid bearing species; (ii) subdivision of sect. Celluloderma according to the presence/absence of cystidioid elements in the pileipellis is not supported by molecular data...
  28. doi Conservation of biotrophy in Hygrophoraceae inferred from combined stable isotope and phylogenetic analyses
    Brian H Seitzman
    Department of Biology, 950 Main Street, Clark University, Worcester, Massachusetts 01610, USA
    Mycologia 103:280-90. 2011
    ..We conclude that Hygrophoraceae of previously unknown nutritional status are unlikely to be saprotrophs and are probably in symbiosis with bryophytes or other understory plants...
  29. ncbi Phylogenetic relationships of Auriculoscypha based on ultrastructural and molecular studies
    T K Arun Kumar
    Department of Plant Biology, University of Minnesota, 1445 Gortner Avenue, St Paul, MN 55108 1095, USA
    Mycol Res 111:268-74. 2007
    ..The placement of Auriculoscypha in the Platygloeales can no longer be justified and both ultrastructural and molecular evidence strongly support the placement of Auriculoscypha in the Septobasidiales...
  30. ncbi When good relationships go bad
    David S Hibbett
    Nature 419:345-6. 2002
  31. ncbi New Asian species of the genus Anamika (euagarics, hebelomatoid clade) based on morphology and ribosomal DNA sequences
    Zhu L Yang
    Kunming Institute of Botany, Chinese Academy of Sciences, Heilongtan, China
    Mycol Res 109:1259-67. 2005
    ..lactariolens comb. nov., a Japanese species originally described in the genus Alnicola. A complete description of A. angustilamellata, including illustrations, is provided...
  32. ncbi A new Sparassis species from Spain described using morphological and molecular data
    Jaime B Blanco-Dios
    Centro de Capacitación e Experimentación Agraria de Lourizán, Lourizán, Pontevedra, Spain
    Mycol Res 110:1227-31. 2006
    ..miniensis and S. brevipes, another European species producing large fruiting bodies but with entire flabellae and no clamp connections...
  33. ncbi Reconstructing the early evolution of Fungi using a six-gene phylogeny
    Timothy Y James
    Department of Biology, Duke University, Durham, North Carolina 27708 0338, USA
    Nature 443:818-22. 2006
    ..The enigmatic microsporidia seem to be derived from an endoparasitic chytrid ancestor similar to Rozella allomycis, on the earliest diverging branch of the fungal phylogenetic tree...
  34. ncbi Phylogeny and a new species of Sparassis (Polyporales, Basidiomycota): evidence from mitochondrial atp6, nuclear rDNA and rpb2 genes
    Yu cheng Dai
    Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang 110016, China
    Mycologia 98:584-92. 2006
    ..brevipes-S. spathulata clade in the ATP6 tree. The differences between the phylogenetic inferences from the atp6 gene and those from nuclear genes within Sparassis species are discussed...
  35. ncbi Research Coordination Networks: a phylogeny for kingdom Fungi (Deep Hypha)
    Meredith Blackwell
    Department of Biological Sciences, Louisiana State University, Baton Rouge 70803, USA
    Mycologia 98:829-37. 2006
    ....