Research Topics
Genomes and Genes | Binghui ShenSummaryAffiliation: City of Hope National Medical Center Country: USA Publications
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Publications
Disruption of the FEN-1/PCNA interaction results in DNA replication defects, pulmonary hypoplasia, pancytopenia, and newborn lethality in miceLi Zheng
City of Hope National Medical Center, Department of Molecular Biology, 1500 East Duarte Rd, Duarte, CA 91010, USA
Mol Cell Biol 27:3176-86. 2007..All newborn FFAA mutant pups died at birth, likely due to pulmonary hypoplasia and pancytopenia. Collectively, our data demonstrate the importance of the FEN-1/PCNA complex in DNA replication and in the embryonic development of mice...
Multiple but dissectible functions of FEN-1 nucleases in nucleic acid processing, genome stability and diseasesBinghui Shen
Department of Radiation Biology, City of Hope National Medical Center and Beckman Research Institute, Duarte, CA 91010, USA
Bioessays 27:717-29. 2005..This review summarizes the knowledge gained through efforts in the past decade to define its structural elements for specific activities and possible pathological consequences of altered functions of this multirole player...
Methylation of FEN1 suppresses nearby phosphorylation and facilitates PCNA bindingZhigang Guo
Department of Cancer Biology, City of Hope National Medical Center and Beckman Research Institute, Duarte, California, USA
Nat Chem Biol 6:766-73. 2010..This consequently leads to a defect in Okazaki fragment maturation, a delay in cell cycle progression, impairment of DNA repair and a high frequency of genome-wide mutations...
Nucleolar localization and dynamic roles of flap endonuclease 1 in ribosomal DNA replication and damage repairZhigang Guo
Department of Radiation Biology, City of Hope National Medical Center and Beckman Research Institute, 1500 East Duarte Road, Duarte, CA 91010, USA
Mol Cell Biol 28:4310-9. 2008..The replacement of Ser(187) by Ala, eliminating the only phosphorylation site, retains FEN1 in nucleoli. Both of the mutations cause UV sensitivity, impair cellular UV damage repair capacity, and decline overall cellular survivorship...
Complementary functions of the Saccharomyces cerevisiae Rad2 family nucleases in Okazaki fragment maturation, mutation avoidance, and chromosome stabilityXuemin Sun
Division of Molecular Biology, City of Hope National Medical Center, Duarte, CA 91010, USA
DNA Repair (Amst) 2:925-40. 2003..Furthermore, Rad2 and Exo1 complemented the mutator phenotypes and cell cycle defects of rad27 mutant strains to differing extents, suggesting distinct in vivo nucleic acid substrates...
The DNA-protein interaction modes of FEN-1 with gap substrates and their implication in preventing duplication mutationsRen Liu
Department of Radiation Biology, City of Hope National Medical Center and Beckman Research Institute, Duarte, CA 91010, USA
Nucleic Acids Res 34:1772-84. 2006..Furthermore, based on the evidence that GEN activity in complex with WRN protein cleaves hairpin and internal loop substrates, we suggest that the GEN activity may prevent repeat expansions and duplication mutations...
Interaction and stimulation of human FEN-1 nuclease activities by heterogeneous nuclear ribonucleoprotein A1 in alpha-segment processing during Okazaki fragment maturationQing Chai
Division of Molecular Biology, City of Hope National Medical Center and Beckman Research Institute, Duarte, California 91010, USA
Biochemistry 42:15045-52. 2003..With longer flap substrates the hnRNP A1 effect is more modest and is suppressed by the addition of RPA. A model is provided to explain the possible in vivo role of this interaction and activity in Okazaki fragment maturation...
Comprehensive mapping of the C-terminus of flap endonuclease-1 reveals distinct interaction sites for five proteins that represent different DNA replication and repair pathwaysZhigang Guo
Department of Radiation Biology, City of Hope National Medical Center and Beckman Research Institute, Duarte, CA 91010, USA
J Mol Biol 377:679-90. 2008..Replacement of one or more residues with an alanine in many cases leads to the complete loss of interaction, which may consequently lead to severe biological defects in mammals...
The 3'-flap pocket of human flap endonuclease 1 is critical for substrate binding and catalysisL David Finger
Division of Radiation Biology, Graduate School of Biological Sciences, City of Hope National Medical Center and Beckman Research Institute, Duarte, CA 91010, USA
J Biol Chem 284:22184-94. 2009..Together the results indicate that the presence of a 3'-flap is the critical feature for efficient hFEN1 substrate recognition and catalysis...
Human DNA2 is a mitochondrial nuclease/helicase for efficient processing of DNA replication and repair intermediatesLi Zheng
Department of Radiation Biology, City of Hope National Medical Center and Beckman Research Institute, Duarte, CA 91010, USA
Mol Cell 32:325-36. 2008..Taken together, our studies illustrate an evolutionarily diversified role of hDNA2 in mitochondrial DNA replication and repair in a mammalian system...
Fen1 mutations that specifically disrupt its interaction with PCNA cause aneuploidy-associated cancerLi Zheng
Department of Cancer Biology, City of Hope National Medical Center and Beckman Research Institute, Duarte, CA 91010, USA
Cell Res 21:1052-67. 2011..Thus, this study establishes an exemplary case for investigating the biological significance of protein-protein interactions by knock-in of a point mutation rather than knock-out of a whole gene...
Concerted action of exonuclease and Gap-dependent endonuclease activities of FEN-1 contributes to the resolution of triplet repeat sequences (CTG)n- and (GAA)n-derived secondary structures formed during maturation of Okazaki fragmentsPurnima Singh
Department of Radiation Biology, City of Hope National Medical Center and Beckman Research Institute, Duarte, California 91010, USA
J Biol Chem 282:3465-77. 2007..A model is presented to explain how the concerted action of EXO and GEN activities may contribute to resolving structured flaps, thereby preventing their expansion in the genome...
Search for apoptotic nucleases in yeast: role of Tat-D nuclease in apoptotic DNA degradationJunzhuan Qiu
Department of Radiation Biology, City of Hope National Medical Center and Beckman Research Institute, Duarte, California 91010, USA
J Biol Chem 280:15370-9. 2005..cerevisiae increases the TUNEL-positive cells and cell survival in response to hydrogen hyperoxide treatment, whereas overexpression of Tat-D facilitates cell death. These results suggest a role of Tat-D in yeast apoptosis...
The retinitis pigmentosa-mutated RP2 protein exhibits exonuclease activity and translocates to the nucleus in response to DNA damageJung Hoon Yoon
Division of Biology, Beckman Research Institute of the City of Hope, 1500 East Duarte Road, Duarte, CA 91010, USA
Exp Cell Res 312:1323-34. 2006..The data suggest that RP2 may have previously unrecognized roles as a DNA damage response factor and 3' to 5' exonuclease...
Distinct roles of two Mg2+ binding sites in regulation of murine flap endonuclease-1 activitiesLi Zheng
Division of Molecular Medicine, City of Hope National Medical Center and Beckman Research Institute, Duarte, California 91010, USA
Biochemistry 41:10323-31. 2002..Taken together, our results suggest distinct roles for two Mg(2+) binding sites in the regulation of mFEN-1 nuclease activities in a mode different from the "two-metal mechanism"...
Interaction interface of human flap endonuclease-1 with its DNA substratesJunzhuan Qiu
Department of Radiation Research, City of Hope National Medical Center and Beckman Research Institute, Duarte, California 91010, USA
J Biol Chem 279:24394-402. 2004..R., Hosfield, D. J., Han, S., Qiu, J., Yelent, B., Shen, B., Tainer, J. A. (2004) Cell 116, 39-50) we are able to propose a reasonable model for how the human FEN-1 protein interacts with its DNA substrates...
Polyploid cells rewire DNA damage response networks to overcome replication stress-induced barriers for tumour progressionLi Zheng
Department of Cancer Biology, City of Hope National Medical Center and Beckman Research Institute, 1500 East Duarte Road, Duarte, California 91010, USA
Nat Commun 3:815. 2012..These molecular changes rewire DNA damage response and repair gene networks in polyploid tumour cells, enabling them to escape replication stress-induced senescence barriers...
Fen1 mutations result in autoimmunity, chronic inflammation and cancersLi Zheng
Department of Radiation Biology, City of Hope National Medical Center and Beckman Research Institute, 1500 East Duarte Road, Duarte, California 91010, USA
Nat Med 13:812-9. 2007....
Novel function of the flap endonuclease 1 complex in processing stalled DNA replication forksLi Zheng
Department of Radiation Biology, City of Hope National Medical Center and Beckman Research Institute, Duarte, California 91010, USA
EMBO Rep 6:83-9. 2005..Replication protein A facilitates FEN-1 interaction with DNA bubble structures. Human FEN-1, but not the GEN-deficient mutant, E178A, was shown to rescue the defect in resistance to UV and camptothecin in a yeast FEN-1 null mutant...
Characterization of the 3' --> 5' exonuclease activity found in human nucleoside diphosphate kinase 1 (NDK1) and several of its homologuesJung Hoon Yoon
Division of Biology, Beckman Research Institute of the City of Hope, Duarte, California 91010, USA
Biochemistry 44:15774-86. 2005..These results suggest that, in addition to maintenance of nucleotide pool balance, the human NDK-like proteins may have previously unrecognized roles in DNA nucleolytic processing...
Suppression of Saccharomyces cerevisiae rad27 null mutant phenotypes by the 5' nuclease domain of Escherichia coli DNA polymerase IXuemin Sun
Division of Molecular Medicine, City of Hope National Medical Center and Beckman Research Institute, Duarte, CA 91010, USA
Curr Genet 41:379-88. 2002..We conclude that the N-terminal nuclease domain of E. coli polymerase I encodes a functional homologue of FEN-1...
Human DNA polymerase beta polymorphism, Arg137Gln, impairs its polymerase activity and interaction with PCNA and the cellular base excision repair capacityZhigang Guo
Department of Radiation Biology, City of Hope National Medical Center, Beckman Research Institute, Duarte, CA 91010, USA
Nucleic Acids Res 37:3431-41. 2009..These data indicate that polymorphisms in base excision repair genes may contribute to the onset and development of cancers...
Overexpression and hypomethylation of flap endonuclease 1 gene in breast and other cancersPurnima Singh
Department of Radiation Biology, City of Hope National Medical Center and Beckman Research Institute, Duarte, California 91010, USA
Mol Cancer Res 6:1710-7. 2008..The overexpression and promoter hypomethylation of FEN1 may serve as biomarkers for monitoring the progression of cancers...
Okazaki fragment maturation: nucleases take centre stageLi Zheng
Department of Cancer Biology, City of Hope National Medical Center and Beckman Research Institute, Duarte, CA 91010, USA
J Mol Cell Biol 3:23-30. 2011..On the other hand, mutations that impair editing out of polymerase α incorporation errors result in cancer displaying a strong mutator phenotype...
Functional alterations of human exonuclease 1 mutants identified in atypical hereditary nonpolyposis colorectal cancer syndromeXuemin Sun
Division of Molecular Medicine, City of Hope National Medical Center and Beckman Research Institute, Duarte, California 91010, USA
Cancer Res 62:6026-30. 2002..The combination of these three point mutations leads to the binding capacity with hMsh2 to nearly zero. Evidence made available in this study sheds light on the pathogenesis of HNPCC, perhaps initiated by an additional MMR gene, hEXO1...
Arginine residues 47 and 70 of human flap endonuclease-1 are involved in DNA substrate interactions and cleavage site determinationJunzhuan Qiu
Division of Molecular Medicine, City of Hope National Medical Center and Beckman Research Institute, Duarte, California 91010, USA
J Biol Chem 277:24659-66. 2002....
Human 3-methyladenine-DNA glycosylase: effect of sequence context on excision, association with PCNA, and stimulation by AP endonucleaseLiqun Xia
Biology Division, Beckman Research Institute, City of Hope National Medical Center, 1450 East Duarte Road, Duarte, CA 91010, USA
J Mol Biol 346:1259-74. 2005..Thus, PCNA could have a role in short-patch BER as well as in long-patch BER. Overall, the data reported here show how multiple factors contribute to the activity of MPG in cells...
Sequential posttranslational modifications program FEN1 degradation during cell-cycle progressionZhigang Guo
Jiangsu Key Laboratory for Molecular and Medical Biotechnology and College of Life Sciences, Nanjing Normal University, Nanjing 210046, China
Mol Cell 47:444-56. 2012..These findings may represent a newly identified regulatory mechanism used by cells to ensure precise cell-cycle progression and to prevent transformation...
Physical and functional interaction between human oxidized base-specific DNA glycosylase NEIL1 and flap endonuclease 1Muralidhar L Hegde
Department of Biochemistry and Molecular Biology, University of Texas, Medical Branch, Galveston, Texas 77555, USA
J Biol Chem 283:27028-37. 2008..Interaction between NEIL1 and FEN-1 is essential for efficient NEIL1-initiated LP-BER. These studies strongly implicate NEIL1 in a distinct subpathway of LP-BER in replicating genomes...
CRN-1, a Caenorhabditis elegans FEN-1 homologue, cooperates with CPS-6/EndoG to promote apoptotic DNA degradationJay Z Parrish
Department of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, CO 80309, USA
EMBO J 22:3451-60. 2003..Our results suggest that CRN-1/FEN-1 may play a critical role in switching the state of cells from DNA replication/repair to DNA degradation during apoptosis...
Structural basis for FEN-1 substrate specificity and PCNA-mediated activation in DNA replication and repairBrian R Chapados
Department of Molecular Biology and Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA 92122, USA
Cell 116:39-50. 2004....
PprI: a general switch responsible for extreme radioresistance of Deinococcus radioduransYuejin Hua
Institute of Nuclear Agricultural Science, Zhejiang University, 310029, Hangzhou, China
Biochem Biophys Res Commun 306:354-60. 2003..These results strongly suggest that PprI plays a crucial role in regulating multiple DNA repair and protection pathways in response to radiation stress...
Mutational spectra of p53 in geographically localized esophageal squamous cell carcinoma groups in ChinaWei Cao
Department of Pathology, Xinxiang Medical College, Xinxiang, Henan, People's Republic of China
Cancer 101:834-44. 2004..The overexpression of p53 protein may have significance as a prognostic factor for patients with esophageal carcinoma...
LexA analog (dra0074) is a regulatory protein that is irrelevant to recA inductionDuohong Sheng
Institute of Nuclear-Agricultural Sciences, Zhejiang University, 310029, Hangzhou, China
J Biochem (Tokyo) 136:787-93. 2004..Results showed that the product of gene dra0074 is not involved in RecA induction, but is a regulator of other metabolisms in D. radiodurans...
Dual negative regulatory mechanisms of RecX on RecA functions in radiation resistance, DNA recombination and consequent genome instability in Deinococcus radioduransDuohong Sheng
Institute of Nuclear-Agricultural Sciences, Zhejiang University, 310029 Hangzhou, China
DNA Repair (Amst) 4:671-8. 2005..These data suggests a dual negative regulatory control of RecX on RecA functions in D. radiodurans...
Removal of oxidative DNA damage via FEN1-dependent long-patch base excision repair in human cell mitochondriaPingfang Liu
Department of Genetics and Complex Diseases, Harvard School of Public Health, Boston, Massachusetts 02115, USA
Mol Cell Biol 28:4975-87. 2008..The mitochondrial LP-BER pathway likely plays important roles in repairing dL lesions and other oxidative lesions and perhaps in normal mtDNA replication...
Three tandem HRDC domains have synergistic effect on the RecQ functions in Deinococcus radioduransLifen Huang
Institute of Nuclear Agricultural Sciences, Zhejiang University, Hangzhou 310029, China
DNA Repair (Amst) 6:167-76. 2007..Based on these data, we propose that the C-terminus of Dr1289 has evolved in D. radiodurans to confront the types and amounts of DNA damage...
Research Grants
- Role of Nucleases in RNA Primer Removal and MutagenesisBinghui Shen; Fiscal Year: 2010..The information made available via these studies will be useful in developing new strategies for cancer prevention and treatment. ..
- Function Analysis of FEN-1 Nuclease in Genome StabilityBinghui Shen; Fiscal Year: 2006..abstract_text> ..
- Role of Nucleases in RNA Primer Removal and MutagenesisBinghui Shen; Fiscal Year: 2007..Information made available from this systematic study will also establish a relationship between this mechanism, unique mutagenic phenotype(s), and development of genetic diseases. ..
- Functional Analysis of FEN-1 Nuclease in Genome Stability and CancersBinghui Shen; Fiscal Year: 2007..Completion of this research will not only clarify the molecular mechanisms underlying cancer pathology, but also provide a solid foundation for development of new regimens for cancer therapy. ..
- Functional Analysis of FEN-1 Nuclease in Genome Stability and CancersBinghui Shen; Fiscal Year: 2009..Completion of this research will not only clarify the molecular mechanisms underlying cancer pathology, but also provide a solid foundation for development of new regimens for cancer therapy. ..
- Functional Analysis of FEN-1 Nuclease in Genome Stability and CancersBinghui Shen; Fiscal Year: 2010..Completion of this research will not only clarify the molecular mechanisms underlying cancer pathology, but also provide a solid foundation for development of new regimens for cancer therapy. ..
- Role of Nucleases in RNA Primer Removal and MutagenesisBinghui Shen; Fiscal Year: 2009..Moreover, the proposed research will have immediate economic impact by creating 1 postdoctoral position and retaining a graduate student and covering efforts of two key existing scientists. ..
- Role of Nucleases in RNA Primer Removal and MutagenesisBinghui Shen; Fiscal Year: 2011..The information made available via these studies will be useful in developing new strategies for cancer prevention and treatment. ..
