Joseph Dhahbi

Summary

Affiliation: Children's Hospital Oakland Research Institute
Country: USA

Publications

  1. ncbi Circulating blood leukocyte gene expression profiles: effects of the Ames dwarf mutation on pathways related to immunity and inflammation
    Joseph Dhahbi
    BioMarker Pharmaceuticals Inc, 5941 Optical Court, San Jose, CA 95138, USA
    Exp Gerontol 42:772-88. 2007
  2. ncbi Identification and correction of systematic error in high-throughput sequence data
    Frazer Meacham
    Department of Mathematics, University of California, Berkeley, 970 Evans Hall 3840, Berkeley, CA 94720, USA
    BMC Bioinformatics 12:451. 2011
  3. ncbi Deep sequencing reveals novel microRNAs and regulation of microRNA expression during cell senescence
    Joseph M Dhahbi
    Center for Genetics, Children s Hospital Oakland Research Institute, Oakland, California, United States of America
    PLoS ONE 6:e20509. 2011
  4. ncbi Phyloepigenomic comparison of great apes reveals a correlation between somatic and germline methylation states
    David I K Martin
    Center for Genetics, Children s Hospital Oakland Research Institute, Oakland, California 94609, USA
    Genome Res 21:2049-57. 2011
  5. ncbi MetMap enables genome-scale Methyltyping for determining methylation states in populations
    Meromit Singer
    Computer Science Division, University of California at Berkeley, Berkeley, California, USA
    PLoS Comput Biol 6:e1000888. 2010

Collaborators

Detail Information

Publications5

  1. ncbi Circulating blood leukocyte gene expression profiles: effects of the Ames dwarf mutation on pathways related to immunity and inflammation
    Joseph Dhahbi
    BioMarker Pharmaceuticals Inc, 5941 Optical Court, San Jose, CA 95138, USA
    Exp Gerontol 42:772-88. 2007
    ..However, whole leukocytes population represents the function of immune system in these organisms...
  2. ncbi Identification and correction of systematic error in high-throughput sequence data
    Frazer Meacham
    Department of Mathematics, University of California, Berkeley, 970 Evans Hall 3840, Berkeley, CA 94720, USA
    BMC Bioinformatics 12:451. 2011
    ..We describe a new type of systematic error that manifests as statistically unlikely accumulations of errors at specific genome (or transcriptome) locations...
  3. ncbi Deep sequencing reveals novel microRNAs and regulation of microRNA expression during cell senescence
    Joseph M Dhahbi
    Center for Genetics, Children s Hospital Oakland Research Institute, Oakland, California, United States of America
    PLoS ONE 6:e20509. 2011
    ..This result greatly extends existing information on the role of miRNAs in cell senescence and is consistent with miRNAs having a causal role in the process...
  4. ncbi Phyloepigenomic comparison of great apes reveals a correlation between somatic and germline methylation states
    David I K Martin
    Center for Genetics, Children s Hospital Oakland Research Institute, Oakland, California 94609, USA
    Genome Res 21:2049-57. 2011
    ..These results provide evidence for epigenetic changes that occur in the germline and distinguish closely related species and suggest that germline epigenetic states might constrain somatic states...
  5. ncbi MetMap enables genome-scale Methyltyping for determining methylation states in populations
    Meromit Singer
    Computer Science Division, University of California at Berkeley, Berkeley, California, USA
    PLoS Comput Biol 6:e1000888. 2010
    ..The combination of MethylSeq and MetMap is a powerful and cost-effective tool for determining genome-scale methyltypes suitable for comparative and association studies...