Pavel Skums

Summary

Affiliation: Centers for Disease Control and Prevention
Country: USA

Publications

  1. pmc Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows
    Pavel Skums
    Laboratory of Molecular Epidemiology and Bioinformatics, Division of Viral Hepatitis, Centers for Disease Control and Prevention, 1600 Clifton Road NE, 30333 Atlanta, GA, USA
    BMC Bioinformatics 14:S2. 2013
  2. ncbi request reprint Numerical detection, measuring and analysis of differential interferon resistance for individual HCV intra-host variants and its influence on the therapy response
    Pavel Skums
    Division of Viral Hepatitis, Centers of Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA 30329, USA
    In Silico Biol 11:263-9. 2011
  3. pmc Efficient error correction for next-generation sequencing of viral amplicons
    Pavel Skums
    Laboratory of Molecular Epidemiology and Bioinformatics, Division of Viral Hepatitis, Centers for Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA 30333, USA
    BMC Bioinformatics 13:S6. 2012
  4. ncbi request reprint Reconstructing viral quasispecies from NGS amplicon reads
    Nicholas Mancuso
    Department of Computer Science, Georgia State University, Atlanta, GA, USA
    In Silico Biol 11:237-49. 2011
  5. doi request reprint Intra-host diversity and evolution of hepatitis C virus endemic to Côte d'Ivoire
    Joseph C Forbi
    Division of Viral Hepatitis, National Center for HIV, Hepatitis, STD, and TB Prevention, Centers for Disease Control and Prevention, Atlanta, Georgia
    J Med Virol 86:765-71. 2014

Collaborators

Detail Information

Publications5

  1. pmc Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows
    Pavel Skums
    Laboratory of Molecular Epidemiology and Bioinformatics, Division of Viral Hepatitis, Centers for Disease Control and Prevention, 1600 Clifton Road NE, 30333 Atlanta, GA, USA
    BMC Bioinformatics 14:S2. 2013
    ..Although a few approaches were developed for this task, accurate reconstruction of quasispecies populations remains greatly unresolved...
  2. ncbi request reprint Numerical detection, measuring and analysis of differential interferon resistance for individual HCV intra-host variants and its influence on the therapy response
    Pavel Skums
    Division of Viral Hepatitis, Centers of Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA 30329, USA
    In Silico Biol 11:263-9. 2011
    ....
  3. pmc Efficient error correction for next-generation sequencing of viral amplicons
    Pavel Skums
    Laboratory of Molecular Epidemiology and Bioinformatics, Division of Viral Hepatitis, Centers for Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA 30333, USA
    BMC Bioinformatics 13:S6. 2012
    ..All these parameters are strongly sequence specific and should be incorporated into the calibration of error-correction algorithms designed for amplicon sequencing...
  4. ncbi request reprint Reconstructing viral quasispecies from NGS amplicon reads
    Nicholas Mancuso
    Department of Computer Science, Georgia State University, Atlanta, GA, USA
    In Silico Biol 11:237-49. 2011
    ..All algorithms have been implemented and made available at https://bitbucket.org/nmancuso/bioa/...
  5. doi request reprint Intra-host diversity and evolution of hepatitis C virus endemic to Côte d'Ivoire
    Joseph C Forbi
    Division of Viral Hepatitis, National Center for HIV, Hepatitis, STD, and TB Prevention, Centers for Disease Control and Prevention, Atlanta, Georgia
    J Med Virol 86:765-71. 2014
    ..Collectively, the results indicate a complex HCV evolution in Côte d'Ivoire, similar to the rest of West Africa, and suggest a unique HCV epidemic history in the country...