- HHMMiR: efficient de novo prediction of microRNAs using hierarchical hidden Markov modelsSabah Kadri
Lane Center for Computational Biology, Carnegie Mellon University, Pittsburgh, PA 15213, USA
BMC Bioinformatics 10:S35. 2009..In spite of their biological significance, the identification of miRNA genes in newly sequenced organisms is still based, to a large degree, on extensive use of evolutionary conservation, which is not always available...
- RNA deep sequencing reveals differential microRNA expression during development of sea urchin and sea starSabah Kadri
Lane Center for Computational Biology, Carnegie Mellon University, Pittsburgh, Pennsylvania, USA
PLoS ONE 6:e29217. 2011..The computational pipeline to analyze Illumina reads is available at http://www.benoslab.pitt.edu/services.html...