Barbara Wold

Summary

Affiliation: California Institute of Technology
Country: USA

Publications

  1. doi request reprint Sequence census methods for functional genomics
    Barbara Wold
    Division of Biology, California Institute of Technology, Pasadena, California 91125, USA
    Nat Methods 5:19-21. 2008
  2. doi request reprint Computation for ChIP-seq and RNA-seq studies
    Shirley Pepke
    Center for Advanced Computing Research, California Institute of Technology, Pasadena, California, USA
    Nat Methods 6:S22-32. 2009
  3. doi request reprint Mapping and quantifying mammalian transcriptomes by RNA-Seq
    Ali Mortazavi
    Division of Biology, MC 156 29, California Institute of Technology, Pasadena, California 91125, USA
    Nat Methods 5:621-8. 2008
  4. pmc Comparative genomics modeling of the NRSF/REST repressor network: from single conserved sites to genome-wide repertoire
    Ali Mortazavi
    Division of Biology, California Institute of Technology, Pasadena, California 91125, USA
    Genome Res 16:1208-21. 2006
  5. ncbi request reprint Genome-wide mapping of in vivo protein-DNA interactions
    David S Johnson
    Department of Genetics, Stanford University School of Medicine, Stanford, CA, 94305 5120, USA
    Science 316:1497-502. 2007

Collaborators

  • Ali Mortazavi
  • Shirley Pepke
  • David S Johnson
  • Richard M Myers
  • Kenneth McCue
  • Brian A Williams
  • Lorian Schaeffer
  • Evonne Chen Leeper Thompson
  • Sarah T Garcia

Detail Information

Publications5

  1. doi request reprint Sequence census methods for functional genomics
    Barbara Wold
    Division of Biology, California Institute of Technology, Pasadena, California 91125, USA
    Nat Methods 5:19-21. 2008
    ..Next-generation sequencing technologies are beginning to facilitate genome sequencing. But in addition, new applications and new assay concepts have emerged that are vastly increasing our ability to understand genome function...
  2. doi request reprint Computation for ChIP-seq and RNA-seq studies
    Shirley Pepke
    Center for Advanced Computing Research, California Institute of Technology, Pasadena, California, USA
    Nat Methods 6:S22-32. 2009
    ....
  3. doi request reprint Mapping and quantifying mammalian transcriptomes by RNA-Seq
    Ali Mortazavi
    Division of Biology, MC 156 29, California Institute of Technology, Pasadena, California 91125, USA
    Nat Methods 5:621-8. 2008
    ..We observed 1.45 x 10(5) distinct splices, and alternative splices were prominent, with 3,500 different genes expressing one or more alternate internal splices...
  4. pmc Comparative genomics modeling of the NRSF/REST repressor network: from single conserved sites to genome-wide repertoire
    Ali Mortazavi
    Division of Biology, California Institute of Technology, Pasadena, California 91125, USA
    Genome Res 16:1208-21. 2006
    ..The resulting network model integrates post-transcriptional and translational controllers, including candidate feedback loops on NRSF and its corepressor, CoREST...
  5. ncbi request reprint Genome-wide mapping of in vivo protein-DNA interactions
    David S Johnson
    Department of Genetics, Stanford University School of Medicine, Stanford, CA, 94305 5120, USA
    Science 316:1497-502. 2007
    ..96] and statistical confidence (P <10(-4)), properties that were important for inferring new candidate interactions. These include key transcription factors in the gene network that regulates pancreatic islet cell development...