Research Topics
Genomes and Genes | Elliot M MeyerowitzSummaryAffiliation: California Institute of Technology Country: USA Publications
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Detail Information
Publications
Stem-cell homeostasis and growth dynamics can be uncoupled in the Arabidopsis shoot apexG Venugopala Reddy
California Institute of Technology, Division of Biology, MC 156 29, 1200 East California Boulevard, Pasadena, CA 91125, USA
Science 310:663-7. 2005....
Plants compared to animals: the broadest comparative study of developmentElliot M Meyerowitz
Division of Biology 156 29, California Institute of Technology, Pasadena, CA 91125, USA
Science 295:1482-5. 2002..Evidence from studies of developmental mechanisms in both kingdoms, and data from genome-sequencing projects, indicate that development evolved independently in the lineages leading to plants and to animals...
Floral stem cell termination involves the direct regulation of AGAMOUS by PERIANTHIAPradeep Das
California Institute of Technology, Pasadena, California 91125, USA
Development 136:1605-11. 2009..These results suggest that the termination of floral stem cell fate is a multiply redundant process involving loci with unrelated floral patterning functions...
Pattern formation during de novo assembly of the Arabidopsis shoot meristemSean P Gordon
Division of Biology, California Institute of Technology, Pasadena, CA, USA
Development 134:3539-48. 2007..We propose that de novo shoot meristem induction is an easily accessible system for the study of patterning and self-organization in the well-studied model organism Arabidopsis...
Multiple feedback loops through cytokinin signaling control stem cell number within the Arabidopsis shoot meristemSean P Gordon
Division of Biology 156 29, California Institute of Technology, 1200 East California Boulevard, Pasadena, CA 91125, USA
Proc Natl Acad Sci U S A 106:16529-34. 2009..Our results also may explain how increasing cytokinin concentration leads to the first steps in reestablishing the shoot stem cell niche in vitro...
The homeotic protein AGAMOUS controls microsporogenesis by regulation of SPOROCYTELESSToshiro Ito
Division of Biology 156 29, California Institute of Technology, 1200 E California Blvd, Pasadena, California 91125, USA
Nature 430:356-60. 2004..Furthermore, we demonstrate that SPL can induce microsporogenesis in the absence of AG function, suggesting that AG controls a specific process during organogenesis by activating another regulator that performs a subset of its functions...
Cell cycle regulates cell type in the Arabidopsis sepalAdrienne H K Roeder
Division of Biology, California Institute of Technology, Pasadena, CA 91125 USA
Development 139:4416-27. 2012..Conversely, endoreduplication represses small cell identity. These results show not only that cell type affects cell cycle regulation, but also that changes in the cell cycle can regulate cell type...
Computational morphodynamics of plants: integrating development over space and timeAdrienne H K Roeder
Division of Biology 156 29, California Institute of Technology, 1200 E California Blvd, Pasadena, California 91125, USA
Nat Rev Mol Cell Biol 12:265-73. 2011..The strength of the field comes from the iterative and combined use of these techniques, which has provided important insights into plant development...
Cytokinin signaling as a positional cue for patterning the apical-basal axis of the growing Arabidopsis shoot meristemVijay S Chickarmane
Division of Biology, California Institute of Technology, Pasadena, CA 91125, USA
Proc Natl Acad Sci U S A 109:4002-7. 2012..These results suggest a plausible dynamic feedback principle by which the SAM stem cell niche is patterned...
Genome-wide analysis of gene expression during early Arabidopsis flower developmentFrank Wellmer
Division of Biology, California Institute of Technology, Pasadena, California, USA
PLoS Genet 2:e117. 2006....
Alignment between PIN1 polarity and microtubule orientation in the shoot apical meristem reveals a tight coupling between morphogenesis and auxin transportMarcus G Heisler
Division of Biology, California Institute of Technology, Pasadena, California, United States of America
PLoS Biol 8:e1000516. 2010..Lastly, through mathematical modeling we show that such a biophysical coupling could mediate the feedback loop between auxin and its transport that underlies plant phyllotaxis...
Redundancy and specialization among plant microRNAs: role of the MIR164 family in developmental robustnessPatrick Sieber
Division of Biology, California Institute of Technology, Pasadena, CA 91125, USA
Development 134:1051-60. 2007....
Arabidopsis regeneration from multiple tissues occurs via a root development pathwayKaoru Sugimoto
Division of Biology 156 29, California Institute of Technology, Pasadena, CA 91125, USA
Dev Cell 18:463-71. 2010..It thus appears that the ectopic activation of a lateral root development program is a common mechanism in callus formation from multiple organs...
Patterns of auxin transport and gene expression during primordium development revealed by live imaging of the Arabidopsis inflorescence meristemMarcus G Heisler
Division of Biology, California Institute of Technology, Pasadena 91125, USA
Curr Biol 15:1899-911. 2005..CONCLUSIONS: These results provide new insight into auxin transport dynamics during primordial positioning and suggest a role for auxin transport in influencing primordial cell type...
The early extra petals1 mutant uncovers a role for microRNA miR164c in regulating petal number in ArabidopsisCatherine C Baker
Division of Biology, California Institute of Technology, Pasadena, CA 91125 USA
Curr Biol 15:303-15. 2005..A loss-of-function allele of MIR164b did not result in a mutant phenotype, possibly because of functional redundancy among the three members of the MIR164 family...
Computational analysis of live cell images of the Arabidopsis thaliana plantAlexandre Cunha
Center for Advanced Computing Research, Division of Engineering and Applied Science, California Institute of Technology, Pasadena, California, USA
Methods Cell Biol 110:285-323. 2012..We illustrate the application of these procedures in investigations aiming to unravel the mechanical and biochemical signaling mechanisms responsible for the coordinated growth and patterning in plants...
Global expression profiling applied to the analysis of Arabidopsis stamen developmentMarcio Alves Ferreira
California Institute of Technology, Division of Biology, Pasadena, California 91125, USA
Plant Physiol 145:747-62. 2007....
An evolutionarily conserved pseudokinase mediates stem cell production in plantsZACHARY L NIMCHUK
Division of Biology 156 29, California Institute of Technology, Pasadena, California 91125, USA
Plant Cell 23:851-4. 2011....
Plant stem cell signaling involves ligand-dependent trafficking of the CLAVATA1 receptor kinaseZACHARY L NIMCHUK
Division of Biology, California Institute of Technology, Pasadena, CA 91125, USA
Curr Biol 21:345-52. 2011..There are many questions regarding the CLV3/CLV1 interaction, including where in the meristem it occurs, how it is regulated, and how it is that a large range of CLV3 concentrations gives no meristem size phenotype...
Transcriptome-wide analysis of uncapped mRNAs in Arabidopsis reveals regulation of mRNA degradationYuling Jiao
California Institute of Technology, Division of Biology 156 29, Pasadena, California 91125, USA
Plant Cell 20:2571-85. 2008..These transcriptome-wide profiles of uncapped mRNAs will aid in illuminating new regulatory mechanisms of eukaryotic transcriptional networks...
MscS-like proteins control plastid size and shape in Arabidopsis thalianaElizabeth S Haswell
Division of Biology, 156 29, California Institute of Technology, 1200 E California Blvd, Pasadena, California 91125, USA
Curr Biol 16:1-11. 2006..MscS-like proteins are found widely in bacterial and archaeal species and have also been identified in fission yeast and plants. None of the eukaryotic members of the family have yet been characterized...
HANABA TARANU is a GATA transcription factor that regulates shoot apical meristem and flower development in ArabidopsisYuanxiang Zhao
Division of Biology, California Institute of Technology, Pasadena, California 91125, USA
Plant Cell 16:2586-600. 2004..Ectopic HAN expression causes growth retardation, aberrant cell division patterns, and loss of meristem activity, suggesting that HAN is involved in controlling cell proliferation and differentiation...
Variability in the control of cell division underlies sepal epidermal patterning in Arabidopsis thalianaAdrienne H K Roeder
Division of Biology, California Institute of Technology, Pasadena, California, United States of America
PLoS Biol 8:e1000367. 2010..Models and observations together demonstrate that variability in the time of cell division is a major determinant in the formation of a characteristic pattern...
Real-time lineage analysis reveals oriented cell divisions associated with morphogenesis at the shoot apex of Arabidopsis thalianaG Venugopala Reddy
California Institute of Technology, Division of Biology, MC 156-29, 1200 E. California Boulevard, Pasadena, CA 91125, USA
Development 131:4225-37. 2004..Distinct lack of cell expansion is seen in a narrow band of cells, which forms the boundary region between developing flower bud and the SAM. We discuss these results in the context of SAM morphogenesis...
Floral induction in tissue culture: a system for the analysis of LEAFY-dependent gene regulationDoris Wagner
Division of Biology, California Institute of Technology, Pasadena, CA 91125, USA
Plant J 39:273-82. 2004..Thus, the floral induction system is suitable for the detection of low abundance transcripts whose expression is controlled in an LFY-dependent manner...
Whorl-specific expression of the SUPERMAN gene of Arabidopsis is mediated by cis elements in the transcribed regionToshiro Ito
Division of Biology 156-29, California Institute of Technology, 1200 East California Boulevard, Pasadena, CA 91125, USA
Curr Biol 13:1524-30. 2003....
Computational morphodynamics: a modeling framework to understand plant growthVijay Chickarmane
Division of Biology, California Institute Technology, Pasadena, California 91125, USA
Annu Rev Plant Biol 61:65-87. 2010....
Segmenting the sepal and shoot apical meristem of Arabidopsis thalianaAlexandre L Cunha
Center for Advanced Computing Research, Pasadena, California 91125, USA
Conf Proc IEEE Eng Med Biol Soc 2010:5338-42. 2010....
Regeneration in plants and animals: dedifferentiation, transdifferentiation, or just differentiation?Kaoru Sugimoto
Division of Biology 156 29, California Institute of Technology, Pasadena, CA 91125, USA
Trends Cell Biol 21:212-8. 2011..We review here some of these data, compare plant and animal regeneration, and argue that the importance of dedifferentiation and plasticity in regenerating systems is due for reevaluation...
Cell-type specific analysis of translating RNAs in developing flowers reveals new levels of controlYuling Jiao
Division of Biology, California Institute of Technology, Pasadena, CA 91125, USA
Mol Syst Biol 6:419. 2010..Finally, we identified a new class of noncoding RNAs associated with polysomes. Findings from our profiling lead to new hypotheses in the understanding of flower development...
Two MscS homologs provide mechanosensitive channel activities in the Arabidopsis rootElizabeth S Haswell
Division of Biology 156 29, California Institute of Technology, Pasadena, CA 91125, USA
Curr Biol 18:730-4. 2008..This is the first molecular identification and characterization of MS channels in plant membranes...
Genome-wide analysis of spatial gene expression in Arabidopsis flowersFrank Wellmer
California Institute of Technology, Division of Biology 156-29, Pasadena, California 91125, USA
Plant Cell 16:1314-26. 2004..These findings indicate that spatially limited expression of a large number of genes is part of flower development and that its extent differs significantly between the reproductive organs and the organs of the perianth...
Floral homeotic genes are targets of gibberellin signaling in flower developmentHao Yu
Division of Biology 156-29, California Institute of Technology, Pasadena, CA 91125, USA
Proc Natl Acad Sci U S A 101:7827-32. 2004..Our results indicate that GA promotes the expression of floral homeotic genes by antagonizing the effects of DELLA proteins, thereby allowing continued flower development...
Repression of AGAMOUS-LIKE 24 is a crucial step in promoting flower developmentHao Yu
Division of Biology 156 29, California Institute of Technology, Pasadena, California 91125, USA
Nat Genet 36:157-61. 2004..This indicates that LFY and AP1 promote floral development not only by positively regulating genes activated in flower development, but also by repressing AGL24, a promoter of inflorescence fate...
SPLAYED, a novel SWI/SNF ATPase homolog, controls reproductive development in ArabidopsisDoris Wagner
Division of Biology 156 29, California Institute of Technology, Pasadena, CA 91125, USA
Curr Biol 12:85-94. 2002..Available data suggests that, while LFY activity is controlled via interaction with tissue-specific coactivators, other mechanisms exist that regulate LFY activity, the identity of which are not known...
A computational image analysis glossary for biologistsAdrienne H K Roeder
Division of Biology, California Institute of Technology, Pasadena, CA 91125, USA
Development 139:3071-80. 2012..In this Primer we present a glossary of image analysis terms to aid biologists and briefly discuss the importance of robust image analysis in developmental studies...
Regeneration in Arabidopsis tissue cultureKaoru Sugimoto
Division of Biology 156 29, California Institute of Technology, Pasadena, CA, USA
Methods Mol Biol 959:265-75. 2013..Here we describe a standard protocol for regenerating Arabidopsis plants in tissue culture, and for preparing and observing samples using confocal microscopy to study cells during regeneration...
The Arabidopsis JAGGED gene encodes a zinc finger protein that promotes leaf tissue developmentCarolyn K Ohno
Division of Biology 156 29, California Institute of Technology, 1200 East California Boulevard, Pasadena, CA 91125, USA
Development 131:1111-22. 2004..Thus, JAG is necessary for proper lateral organ shape and is sufficient to induce the proliferation of lateral organ tissue...
An auxin-driven polarized transport model for phyllotaxisHenrik Jonsson
Computational Biology and Biological Physics Group, Department of Theoretical Physics, Lund University, S 221 00 Lund, Sweden
Proc Natl Acad Sci U S A 103:1633-8. 2006..The model shows how polarized transport can drive the formation of regular patterns...
ABERRANT TESTA SHAPE encodes a KANADI family member, linking polarity determination to separation and growth of Arabidopsis ovule integumentsJessica Messmer McAbee
Section of Molecular Biology, University of California, 1 Shields Ave, Davis, CA 95616, USA
Plant J 46:522-31. 2006..Together, these two hypotheses lead us to propose a model for normal integument growth that also explains the described mutant phenotypes...
Transformation of shoots into roots in Arabidopsis embryos mutant at the TOPLESS locusJeff A Long
Department of Genetics and Program in Cellular and Molecular Biology, University of Wisconsin-Madison, Madison, WI, USA
Development 129:2797-806. 2002....
The homeotic protein AGAMOUS controls late stamen development by regulating a jasmonate biosynthetic gene in ArabidopsisToshiro Ito
Temasek Life Sciences Laboratory, National University of Singapore, Singapore 117604, Singapore
Plant Cell 19:3516-29. 2007....
Modeling the organization of the WUSCHEL expression domain in the shoot apical meristemHenrik Jonsson
Department of Theoretical Physics, Complex Systems Division, Lund University Sweden
Bioinformatics 21:i232-40. 2005..Predictive mathematical models describing the system should provide a useful tool for investigating and discriminating among possible hypotheses, by determining which hypotheses best explain observed gene expression dynamics...
Microarray analysis reveals altered expression of a large number of nuclear genes in developing cytoplasmic male sterile Brassica napus flowersJenny Carlsson
Department of Plant Biology and Forest Genetics, Swedish University of Agricultural Sciences, Box 7080, SE 750 07 Uppsala, Sweden
Plant J 49:452-62. 2007..These results suggest that AP3 expression in stamens depends on proper mt function and a correct nuclear-mt interaction, and that mt alterations cause the male sterility phenotype of the CMS line...
Antagonistic regulation of PIN phosphorylation by PP2A and PINOID directs auxin fluxMarta Michniewicz
Zentrum für Molekularbiologie der Pflanzen, Universitat Tubingen, Tubingen, Germany
Cell 130:1044-56. 2007..In the case of PIN proteins, this mechanism enables switches in the direction of intercellular auxin fluxes, which mediate differential growth, tissue patterning, and organogenesis...
TOPLESS regulates apical embryonic fate in ArabidopsisJeff A Long
Plant Biology Laboratory, Salk Institute for Biological Sciences, 10010 North Torrey Pines Road, La Jolla, CA 92037, USA
Science 312:1520-3. 2006..These data point to a transcriptional repression mechanism that prevents root formation in the shoot pole during Arabidopsis embryogenesis...
The impact of Arabidopsis on human health: diversifying our portfolioAlan M Jones
Department of Biology, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
Cell 133:939-43. 2008..Many discoveries with direct relevance to human health and disease have been elaborated using Arabidopsis, and several processes important to human biology are more easily studied in this versatile model plant...
Unravelling developmental dynamics: transient intervention and live imaging in plantsG Venugopala Reddy
Department of Botany and Plant Sciences, 2150 Batchelor Hall, University of California, Riverside, California 92521, USA
Nat Rev Mol Cell Biol 8:491-501. 2007..In this Review, we emphasize the insights gained from simultaneous use of live imaging and transient perturbation technologies to capture the dynamic properties of plant processes...
