Fabio Vandin

Summary

Affiliation: Brown University
Country: USA

Publications

  1. pmc Finding driver pathways in cancer: models and algorithms
    Fabio Vandin
    Department of Computer Science, and Center for Computational Molecular Biology Brown University, 115 Waterman St, 4th Flr, Providence, RI 02912, USA
    Algorithms Mol Biol 7:23. 2012
  2. doi request reprint Algorithms for detecting significantly mutated pathways in cancer
    Fabio Vandin
    Department of Computer Science, Brown University, Providence, Rhode Island, USA
    J Comput Biol 18:507-22. 2011
  3. pmc De novo discovery of mutated driver pathways in cancer
    Fabio Vandin
    Department of Computer Science and Center for Computational Molecular Biology, Brown University, Providence, Rhode Island 02912, USA
    Genome Res 22:375-85. 2012
  4. pmc Ballast: a ball-based algorithm for structural motifs
    Lu He
    Department of Computer Science, Dartmouth College, Hanover, NH 03755, USA
    J Comput Biol 20:137-51. 2013

Detail Information

Publications4

  1. pmc Finding driver pathways in cancer: models and algorithms
    Fabio Vandin
    Department of Computer Science, and Center for Computational Molecular Biology Brown University, 115 Waterman St, 4th Flr, Providence, RI 02912, USA
    Algorithms Mol Biol 7:23. 2012
    ..abstract:..
  2. doi request reprint Algorithms for detecting significantly mutated pathways in cancer
    Fabio Vandin
    Department of Computer Science, Brown University, Providence, Rhode Island, USA
    J Comput Biol 18:507-22. 2011
    ..We anticipate that our approach will find increasing use as cancer genome studies increase in size and scope...
  3. pmc De novo discovery of mutated driver pathways in cancer
    Fabio Vandin
    Department of Computer Science and Center for Computational Molecular Biology, Brown University, Providence, Rhode Island 02912, USA
    Genome Res 22:375-85. 2012
    ..Our Dendrix algorithms scale to whole-genome analysis of thousands of patients and thus will prove useful for larger data sets to come from The Cancer Genome Atlas (TCGA) and other large-scale cancer genome sequencing projects...
  4. pmc Ballast: a ball-based algorithm for structural motifs
    Lu He
    Department of Computer Science, Dartmouth College, Hanover, NH 03755, USA
    J Comput Biol 20:137-51. 2013
    ..By supporting generic measures of compositional and geometric similarity, Ballast provides a powerful substrate for the development of motif-matching algorithms...