Anna Ritz

Summary

Affiliation: Brown University
Country: USA

Publications

  1. pmc Quantitative time-resolved phosphoproteomic analysis of mast cell signaling
    Lulu Cao
    Department of Chemistry, Brown University, Providence, RI 02912, USA
    J Immunol 179:5864-76. 2007
  2. pmc Discovery of phosphorylation motif mixtures in phosphoproteomics data
    Anna Ritz
    Department of Computer Science, Brown University, Toyota Technological Institute at Chicago, Chicago, IL, USA
    Bioinformatics 25:14-21. 2009
  3. pmc Detection of recurrent rearrangement breakpoints from copy number data
    Anna Ritz
    Department of Computer Science, Brown University, Providence, RI, USA
    BMC Bioinformatics 12:114. 2011
  4. pmc Quantitative phosphoproteomics reveals SLP-76 dependent regulation of PAG and Src family kinases in T cells
    Lulu Cao
    Department of Chemistry, Brown University, Providence, Rhode Island, United States of America
    PLoS ONE 7:e46725. 2012
  5. pmc A new approach for quantitative phosphoproteomic dissection of signaling pathways applied to T cell receptor activation
    Vinh Nguyen
    Department of Molecular Biology, Brown University, Providence, Rhode Island 02912, USA
    Mol Cell Proteomics 8:2418-31. 2009
  6. pmc Reconstructing cancer genomes from paired-end sequencing data
    Layla Oesper
    Department of Computer Science, Brown University, Providence, RI, USA
    BMC Bioinformatics 13:S10. 2012
  7. pmc Integrated genomics of ovarian xenograft tumor progression and chemotherapy response
    Ashley Stuckey
    Molecular Therapeutics Laboratory, Program in Women s Oncology, Department of Obstetrics and Gynecology, Women and Infants7 Hospital, Alpert Medical School of Brown University, Providence, RI 02905, USA
    BMC Cancer 11:308. 2011
  8. doi request reprint Structural variation analysis with strobe reads
    Anna Ritz
    Department of Computer Science, Brown University, Providence, RI 02912, USA
    Bioinformatics 26:1291-8. 2010

Collaborators

Detail Information

Publications8

  1. pmc Quantitative time-resolved phosphoproteomic analysis of mast cell signaling
    Lulu Cao
    Department of Chemistry, Brown University, Providence, RI 02912, USA
    J Immunol 179:5864-76. 2007
    ....
  2. pmc Discovery of phosphorylation motif mixtures in phosphoproteomics data
    Anna Ritz
    Department of Computer Science, Brown University, Toyota Technological Institute at Chicago, Chicago, IL, USA
    Bioinformatics 25:14-21. 2009
    ..Modification of proteins via phosphorylation is a primary mechanism for signal transduction in cells. Phosphorylation sites on proteins are determined in part through particular patterns, or motifs, present in the amino acid sequence...
  3. pmc Detection of recurrent rearrangement breakpoints from copy number data
    Anna Ritz
    Department of Computer Science, Brown University, Providence, RI, USA
    BMC Bioinformatics 12:114. 2011
    ..Typically, the interior of a recurrent CNV is examined for genes or other loci associated with a phenotype. However, in some cases, such as gene truncations and fusion genes, the target of variant lies at the boundary of the variant...
  4. pmc Quantitative phosphoproteomics reveals SLP-76 dependent regulation of PAG and Src family kinases in T cells
    Lulu Cao
    Department of Chemistry, Brown University, Providence, Rhode Island, United States of America
    PLoS ONE 7:e46725. 2012
    ..Altogether our data suggests unique modes of regulation of positive and negative feedback pathways in T cells by SLP-76, reconfirming its central role in the pathway...
  5. pmc A new approach for quantitative phosphoproteomic dissection of signaling pathways applied to T cell receptor activation
    Vinh Nguyen
    Department of Molecular Biology, Brown University, Providence, Rhode Island 02912, USA
    Mol Cell Proteomics 8:2418-31. 2009
    ..These methods are adaptable to any cell culture signaling system in which isogenic wild type and mutant cells have been or can be derived using any available phosphopeptide enrichment strategy...
  6. pmc Reconstructing cancer genomes from paired-end sequencing data
    Layla Oesper
    Department of Computer Science, Brown University, Providence, RI, USA
    BMC Bioinformatics 13:S10. 2012
    ..We present an efficient algorithm for reconstructing the block organization of a cancer genome from paired-end DNA sequencing data...
  7. pmc Integrated genomics of ovarian xenograft tumor progression and chemotherapy response
    Ashley Stuckey
    Molecular Therapeutics Laboratory, Program in Women s Oncology, Department of Obstetrics and Gynecology, Women and Infants7 Hospital, Alpert Medical School of Brown University, Providence, RI 02905, USA
    BMC Cancer 11:308. 2011
    ..In this study we identify genes and gene networks important for the efficacy of a pre-clinical anti-tumor therapeutic, MT19c...
  8. doi request reprint Structural variation analysis with strobe reads
    Anna Ritz
    Department of Computer Science, Brown University, Providence, RI 02912, USA
    Bioinformatics 26:1291-8. 2010
    ..Strobe sequencing holds promise for unraveling complex variants that have been difficult to characterize with current sequencing technologies...