Daniel Van Der Lelie

Summary

Affiliation: Brookhaven National Laboratory
Country: USA

Publications

  1. pmc Bioprospecting metagenomes: glycosyl hydrolases for converting biomass
    Luen Luen Li
    Biology Department, Brookhaven National Laboratory, Upton, New York 11973, USA
    Biotechnol Biofuels 2:10. 2009
  2. pmc Horizontal gene transfer to endogenous endophytic bacteria from poplar improves phytoremediation of toluene
    Safiyh Taghavi
    Brookhaven National Laboratory, Biology Department, Building 463, Upton, NY 11973 5000
    Appl Environ Microbiol 71:8500-5. 2005
  3. pmc Use of single-point genome signature tags as a universal tagging method for microbial genome surveys
    Daniel Van Der Lelie
    Brookhaven National Laboratory, Biology Department, Building 463, Upton, NY 11973, USA
    Appl Environ Microbiol 72:2092-101. 2006
  4. pmc Genome survey and characterization of endophytic bacteria exhibiting a beneficial effect on growth and development of poplar trees
    Safiyh Taghavi
    Brookhaven National Laboratory, Biology Department, Upton, NY 11973 5000, USA
    Appl Environ Microbiol 75:748-57. 2009
  5. pmc Genome sequence of the plant growth promoting endophytic bacterium Enterobacter sp. 638
    Safiyh Taghavi
    Biology Department, Brookhaven National Laboratory, Upton, New York, United States of America
    PLoS Genet 6:e1000943. 2010
  6. doi request reprint ArsR arsenic-resistance regulatory protein from Cupriavidus metallidurans CH34
    Yian Biao Zhang
    Biology Department, Brookhaven National Laboratory, Upton, NY 11973, USA
    Antonie Van Leeuwenhoek 96:161-70. 2009
  7. doi request reprint Elevated atmospheric CO2 affects soil microbial diversity associated with trembling aspen
    Celine Lesaulnier
    Brookhaven National Laboratory, Biology Department, Building 463, Upton, New York 11973 5000, USA
    Environ Microbiol 10:926-41. 2008
  8. doi request reprint Heterogeneous nanoclusters assembled by PNA-templated double-stranded DNA
    Dazhi Sun
    Center for Functional Nanomaterials, Brookhaven National Laboratory Upton, NY 11973, USA
    Nanoscale 4:6722-5. 2012
  9. doi request reprint Site-selective binding of nanoparticles to double-stranded DNA via peptide nucleic acid "invasion"
    Andrea L Stadler
    Biology Department, Brookhaven National Laboratory, Upton, New York 11973, USA
    ACS Nano 5:2467-74. 2011
  10. doi request reprint Controllable g5p-protein-directed aggregation of ssDNA-gold nanoparticles
    Soo Kwan Lee
    Center for Functional Nanomaterials, and Biology Department, Brookhaven National Laboratory, Upton, New York 11973, USA
    Langmuir 25:657-60. 2009

Collaborators

Detail Information

Publications22

  1. pmc Bioprospecting metagenomes: glycosyl hydrolases for converting biomass
    Luen Luen Li
    Biology Department, Brookhaven National Laboratory, Upton, New York 11973, USA
    Biotechnol Biofuels 2:10. 2009
    ..We also describe the unusual enzymes discovered via metagenomics approaches, and discuss the future prospects for metagenome technologies...
  2. pmc Horizontal gene transfer to endogenous endophytic bacteria from poplar improves phytoremediation of toluene
    Safiyh Taghavi
    Brookhaven National Laboratory, Biology Department, Building 463, Upton, NY 11973 5000
    Appl Environ Microbiol 71:8500-5. 2005
    ....
  3. pmc Use of single-point genome signature tags as a universal tagging method for microbial genome surveys
    Daniel Van Der Lelie
    Brookhaven National Laboratory, Biology Department, Building 463, Upton, NY 11973, USA
    Appl Environ Microbiol 72:2092-101. 2006
    ..This concept was further used successfully to identify the individual members of a defined microbial community...
  4. pmc Genome survey and characterization of endophytic bacteria exhibiting a beneficial effect on growth and development of poplar trees
    Safiyh Taghavi
    Brookhaven National Laboratory, Biology Department, Upton, NY 11973 5000, USA
    Appl Environ Microbiol 75:748-57. 2009
    ..Understanding the interactions between endophytic bacteria and their host plants should ultimately result in the design of strategies for improved poplar biomass production on marginal soils as a feedstock for biofuels...
  5. pmc Genome sequence of the plant growth promoting endophytic bacterium Enterobacter sp. 638
    Safiyh Taghavi
    Biology Department, Brookhaven National Laboratory, Upton, New York, United States of America
    PLoS Genet 6:e1000943. 2010
    ..638. This information can be further exploited to improve establishment and sustainable production of poplar as an energy feedstock on marginal, non-agricultural soils using endophytic bacteria as growth promoting agents...
  6. doi request reprint ArsR arsenic-resistance regulatory protein from Cupriavidus metallidurans CH34
    Yian Biao Zhang
    Biology Department, Brookhaven National Laboratory, Upton, NY 11973, USA
    Antonie Van Leeuwenhoek 96:161-70. 2009
    ....
  7. doi request reprint Elevated atmospheric CO2 affects soil microbial diversity associated with trembling aspen
    Celine Lesaulnier
    Brookhaven National Laboratory, Biology Department, Building 463, Upton, New York 11973 5000, USA
    Environ Microbiol 10:926-41. 2008
    ....
  8. doi request reprint Heterogeneous nanoclusters assembled by PNA-templated double-stranded DNA
    Dazhi Sun
    Center for Functional Nanomaterials, Brookhaven National Laboratory Upton, NY 11973, USA
    Nanoscale 4:6722-5. 2012
    ..This novel strategy facilitates the incorporation of double-stranded DNA into the nanoparticle assembly design...
  9. doi request reprint Site-selective binding of nanoparticles to double-stranded DNA via peptide nucleic acid "invasion"
    Andrea L Stadler
    Biology Department, Brookhaven National Laboratory, Upton, New York 11973, USA
    ACS Nano 5:2467-74. 2011
    ..This method significantly broadens the molecular toolbox for constructing nanoscale systems by including the most conventional not yet utilized DNA motif, double helix DNA...
  10. doi request reprint Controllable g5p-protein-directed aggregation of ssDNA-gold nanoparticles
    Soo Kwan Lee
    Center for Functional Nanomaterials, and Biology Department, Brookhaven National Laboratory, Upton, New York 11973, USA
    Langmuir 25:657-60. 2009
    ..Our approach offers great promise for designing biologically functional, controllable protein/nanoparticle composites...
  11. pmc Complete genome sequence of Clostridium sp. strain BNL1100, a cellulolytic mesophile isolated from corn stover
    Luen Luen Li
    Biology Department, Brookhaven National Laboratory, Upton, New York, USA
    J Bacteriol 194:6982-3. 2012
    ..The 4,613,747-bp genome of strain BNL1100 contains 4,025 putative protein-coding genes, of which 103 are glycoside hydrolases, the highest detected number in cluster III clostridia...
  12. pmc The metagenome of an anaerobic microbial community decomposing poplar wood chips
    Daniel Van Der Lelie
    Biology Department, Brookhaven National Laboratory, Upton, New York, United States of America
    PLoS ONE 7:e36740. 2012
    ..We suggest that these compounds are released from the lignin fraction in poplar hardwood during the decay process, which would point to lignin-modification or depolymerization under anaerobic conditions...
  13. pmc Genomic signature tags (GSTs): a system for profiling genomic DNA
    John J Dunn
    Biology Department, Brookhaven National Laboratory, Upton, New York 11973, USA
    Genome Res 12:1756-65. 2002
    ..The GST profile predicts that this strain has several changes relative to the archetype CO92 strain, including deletion of a 57-kb region of the chromosome known to be an unstable pathogenicity island...
  14. doi request reprint DNA-incorporating nanomaterials in biotechnological applications
    Andrea Stadler
    Biology Department, Brookhaven National Laboratory, Upton, New York, NY 11973, USA
    Nanomedicine (Lond) 5:319-34. 2010
    ..The comparison between various detection platforms, their sensitivity and selectivity, and specific applications are reviewed...
  15. doi request reprint Microbial community dynamics in uranium contaminated subsurface sediments under biostimulated conditions with high nitrate and nickel pressure
    David Moreels
    Biology Department, Brookhaven National Laboratory, Bldg 463, Upton, NY 11973, USA
    Environ Sci Pollut Res Int 15:481-91. 2008
    ..Our aim is to test biostimulation of the endogenous microbial communities to improve nitrate reduction and subsequent U(VI) reduction under conditions of elevated heavy metals...
  16. doi request reprint Lead(II) resistance in Cupriavidus metallidurans CH34: interplay between plasmid and chromosomally-located functions
    Safiyh Taghavi
    Biology Department, Brookhaven National Laboratory, Building 463, Upton, NY 11973 5000, USA
    Antonie Van Leeuwenhoek 96:171-82. 2009
    ....
  17. pmc Comparative genomics and functional analysis of niche-specific adaptation in Pseudomonas putida
    Xiao Wu
    Biology Department, Brookhaven National Laboratory, Upton, NY, USA
    FEMS Microbiol Rev 35:299-323. 2011
    ....
  18. doi request reprint Enzyme activity in dialkyl phosphate ionic liquids
    Marie F Thomas
    Department of Chemistry, Brookhaven National Laboratory, P O Box 5000, Upton, NY 11973, USA
    Bioresour Technol 102:11200-3. 2011
    ..Generally speaking, activity decreased sharply for concentrations of [emim][dep] above 10% v/v, while the other ionic liquids showed less impact on activity up to 20% v/v...
  19. ncbi request reprint Continuous phase transformation in nanocube assemblies
    Yugang Zhang
    Center for Functional Nanomaterials, Brookhaven National Laboratory, Upton, New York 11973, USA
    Phys Rev Lett 107:135701. 2011
    ..We established a quantitative relationship between the particle shape evolution from cubes to quasispheres and the lattice distortion during the transformation, with a pathway exhibiting the highest known packing...
  20. pmc Crystal structure of ChrR--a quinone reductase with the capacity to reduce chromate
    Subramaniam Eswaramoorthy
    Department of Biology, Brookhaven National Laboratory, Upton, New York, USA
    PLoS ONE 7:e36017. 2012
    ..Changes in each of these amino acids enhanced chromate reductase activity of the enzyme, showing that this network is centrally involved in chromate reduction...
  21. ncbi request reprint Phase behavior of nanoparticles assembled by DNA linkers
    Huiming Xiong
    Center for Functional Nanomaterials, Brookhaven National Laboratory, Upton, New York 11973, USA
    Phys Rev Lett 102:015504. 2009
    ..The influence of linkage defects on crystalline structure was also examined...
  22. doi request reprint Stepwise surface encoding for high-throughput assembly of nanoclusters
    Mathew M Maye
    Center for Functional Nanomaterials, Brookhaven National Laboratory, Upton, New York 11973, USA
    Nat Mater 8:388-91. 2009
    ..The method is scalable and modular, assuring large quantities of clusters of designated sizes and compositions...