Denise Y F Mak

Summary

Affiliation: Boston University
Country: USA

Publications

  1. ncbi request reprint Indel seeds for homology search
    Denise Mak
    Graduate Program in Bioinformatics, Boston University, Boston, MA 02215, USA
    Bioinformatics 22:e341-9. 2006
  2. doi request reprint All hits all the time: parameter-free calculation of spaced seed sensitivity
    Denise Y F Mak
    Graduate Program in Bioinformatics, Boston University, Boston, MA 02215, USA
    Bioinformatics 25:302-8. 2009

Detail Information

Publications2

  1. ncbi request reprint Indel seeds for homology search
    Denise Mak
    Graduate Program in Bioinformatics, Boston University, Boston, MA 02215, USA
    Bioinformatics 22:e341-9. 2006
    ..We discuss the practical aspect of using indel seeds and finally we present results from a search for inverted repeats in the dog genome using both indel and spaced seeds...
  2. doi request reprint All hits all the time: parameter-free calculation of spaced seed sensitivity
    Denise Y F Mak
    Graduate Program in Bioinformatics, Boston University, Boston, MA 02215, USA
    Bioinformatics 25:302-8. 2009
    ..This leads to the startling observation that out of thousands of seeds, only a handful have any chance of being optimal. We then show how to identify optimal seeds and the boundaries within probability space where they are optimal...