Adam M Gustafson

Summary

Affiliation: Boston University
Country: USA

Publications

  1. pmc Smoking-induced gene expression changes in the bronchial airway are reflected in nasal and buccal epithelium
    Sriram Sridhar
    Pulmonary Center, Boston University School of Medicine, Albany Street, Boston Massachusetts, USA
    BMC Genomics 9:259. 2008
  2. pmc Towards the identification of essential genes using targeted genome sequencing and comparative analysis
    Adam M Gustafson
    Bioinformatics Graduate Program, Boston University, Boston, MA 02215 USA
    BMC Genomics 7:265. 2006
  3. pmc High-precision high-coverage functional inference from integrated data sources
    Bolan Linghu
    Bioinformatics Graduate Program, Boston University, Boston, MA, 02215, USA
    BMC Bioinformatics 9:119. 2008
  4. pmc Comparative assessment of performance and genome dependence among phylogenetic profiling methods
    Evan S Snitkin
    Bioinformatics Graduate Program, Boston University, Boston, USA
    BMC Bioinformatics 7:420. 2006
  5. pmc Genetic and functional diversification of small RNA pathways in plants
    Zhixin Xie
    Center for Gene Research and Biotechnology and Department of Botany and Plant Pathology, Oregon State University, Corvallis, USA
    PLoS Biol 2:E104. 2004
  6. ncbi request reprint Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana
    Edwards Allen
    Center for Gene Research and Biotechnology, Oregon State University, Corvallis, Oregon 97331, USA
    Nat Genet 36:1282-90. 2004
  7. pmc ASRP: the Arabidopsis Small RNA Project Database
    Adam M Gustafson
    Center for Gene Research and Biotechnology, Oregon State University, Corvallis, OR 97331, USA
    Nucleic Acids Res 33:D637-40. 2005
  8. ncbi request reprint microRNA-directed phasing during trans-acting siRNA biogenesis in plants
    Edwards Allen
    Center for Gene Research and Biotechnology, Oregon State University, Corvallis, Oregon 97331, USA
    Cell 121:207-21. 2005

Collaborators

Detail Information

Publications8

  1. pmc Smoking-induced gene expression changes in the bronchial airway are reflected in nasal and buccal epithelium
    Sriram Sridhar
    Pulmonary Center, Boston University School of Medicine, Albany Street, Boston Massachusetts, USA
    BMC Genomics 9:259. 2008
    ..In this study, we explored relationships in whole-genome gene expression between extrathorcic (buccal and nasal) and intrathoracic (bronchial) epithelium in healthy current and never smokers...
  2. pmc Towards the identification of essential genes using targeted genome sequencing and comparative analysis
    Adam M Gustafson
    Bioinformatics Graduate Program, Boston University, Boston, MA 02215 USA
    BMC Genomics 7:265. 2006
    ....
  3. pmc High-precision high-coverage functional inference from integrated data sources
    Bolan Linghu
    Bioinformatics Graduate Program, Boston University, Boston, MA, 02215, USA
    BMC Bioinformatics 9:119. 2008
    ....
  4. pmc Comparative assessment of performance and genome dependence among phylogenetic profiling methods
    Evan S Snitkin
    Bioinformatics Graduate Program, Boston University, Boston, USA
    BMC Bioinformatics 7:420. 2006
    ..Here we explore the application of phylogenetic profiling, a method that exploits the evolutionary co-occurrence of genes in the assignment of functional linkages, to eukaryotic genomes...
  5. pmc Genetic and functional diversification of small RNA pathways in plants
    Zhixin Xie
    Center for Gene Research and Biotechnology and Department of Botany and Plant Pathology, Oregon State University, Corvallis, USA
    PLoS Biol 2:E104. 2004
    ..We conclude that proliferation and diversification of DCL and RDR genes during evolution of plants contributed to specialization of small RNA-directed pathways for development, chromatin structure, and defense...
  6. ncbi request reprint Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana
    Edwards Allen
    Center for Gene Research and Biotechnology, Oregon State University, Corvallis, Oregon 97331, USA
    Nat Genet 36:1282-90. 2004
    ..We propose a model for miRNA evolution that suggests a mechanism for de novo generation of new miRNA genes with unique target specificities...
  7. pmc ASRP: the Arabidopsis Small RNA Project Database
    Adam M Gustafson
    Center for Gene Research and Biotechnology, Oregon State University, Corvallis, OR 97331, USA
    Nucleic Acids Res 33:D637-40. 2005
    ..0 of the database contains 1920 unique sequences, with tools to assist in miRNA and siRNA identification and analysis. The comprehensive database is publicly available through a web interface at http://asrp.cgrb.oregonstate.edu...
  8. ncbi request reprint microRNA-directed phasing during trans-acting siRNA biogenesis in plants
    Edwards Allen
    Center for Gene Research and Biotechnology, Oregon State University, Corvallis, Oregon 97331, USA
    Cell 121:207-21. 2005
    ....