Hwan Su Yoon

Summary

Affiliation: Bigelow Laboratory for Ocean Sciences
Country: USA

Publications

  1. pmc Data mining approach identifies research priorities and data requirements for resolving the red algal tree of life
    Heroen Verbruggen
    Phycology Research Group and Center for Molecular Phylogenetics and Evolution, Ghent University, Krijgslaan 281, 9000 Ghent, Belgium
    BMC Evol Biol 10:16. 2010
  2. pmc A single origin of the photosynthetic organelle in different Paulinella lineages
    Hwan Su Yoon
    Bigelow Laboratory for Ocean Sciences, West Boothbay Harbor, Maine, USA
    BMC Evol Biol 9:98. 2009
  3. pmc Broadly sampled multigene trees of eukaryotes
    Hwan Su Yoon
    Department of Biological Sciences, Smith College, Northampton, MA 01063, USA
    BMC Evol Biol 8:14. 2008
  4. doi request reprint Supermatrix data highlight the phylogenetic relationships of photosynthetic stramenopiles
    Eun Chan Yang
    Bigelow Laboratory for Ocean Sciences, West Boothbay Harbor, ME 04575, USA
    Protist 163:217-31. 2012
  5. doi request reprint Ancient gene paralogy may mislead inference of plastid phylogeny
    Huan Qiu
    Bigelow Laboratory for Ocean Sciences, West Boothbay Harbor, ME, USA
    Mol Biol Evol 29:3333-43. 2012
  6. doi request reprint Single-cell genomics reveals organismal interactions in uncultivated marine protists
    Hwan Su Yoon
    Bigelow Laboratory for Ocean Sciences, West Boothbay Harbor, ME 04575, USA
    Science 332:714-7. 2011
  7. ncbi request reprint A molecular timeline for the origin of photosynthetic eukaryotes
    Hwan Su Yoon
    Department of Biological Sciences and Center for Comparative Genomics, University of Iowa, Iowa, USA
    Mol Biol Evol 21:809-18. 2004
  8. ncbi request reprint Hidden biodiversity of the extremophilic Cyanidiales red algae
    Claudia Ciniglia
    Dipartimento di Biologia Vegetale, Universita Federico II, Via Foria 223, 80139 Napoli, Italy
    Mol Ecol 13:1827-38. 2004
  9. ncbi request reprint Phylogenomic analysis supports the monophyly of cryptophytes and haptophytes and the association of rhizaria with chromalveolates
    Jeremiah D Hackett
    Department of Biological Sciences and Roy J Carver Center for Comparative Genomics, University of Iowa, IA, USA
    Mol Biol Evol 24:1702-13. 2007
  10. pmc Establishment of endolithic populations of extremophilic Cyanidiales (Rhodophyta)
    Hwan Su Yoon
    Department of Biological Sciences and Roy J, Carver Center for Comparative Genomics, University of Iowa, Iowa City, Iowa 52242, USA
    BMC Evol Biol 6:78. 2006

Collaborators

Detail Information

Publications16

  1. pmc Data mining approach identifies research priorities and data requirements for resolving the red algal tree of life
    Heroen Verbruggen
    Phycology Research Group and Center for Molecular Phylogenetics and Evolution, Ghent University, Krijgslaan 281, 9000 Ghent, Belgium
    BMC Evol Biol 10:16. 2010
    ..We aim to locate remaining regions of low support in the topology, evaluate their causes and estimate the amount of data required to resolve them...
  2. pmc A single origin of the photosynthetic organelle in different Paulinella lineages
    Hwan Su Yoon
    Bigelow Laboratory for Ocean Sciences, West Boothbay Harbor, Maine, USA
    BMC Evol Biol 9:98. 2009
    ..The second was to assess the phylogenetic diversity of photosynthetic Paulinella to test the hypothesis they share a vertically inherited plastid that originated in their common ancestor...
  3. pmc Broadly sampled multigene trees of eukaryotes
    Hwan Su Yoon
    Department of Biological Sciences, Smith College, Northampton, MA 01063, USA
    BMC Evol Biol 8:14. 2008
    ....
  4. doi request reprint Supermatrix data highlight the phylogenetic relationships of photosynthetic stramenopiles
    Eun Chan Yang
    Bigelow Laboratory for Ocean Sciences, West Boothbay Harbor, ME 04575, USA
    Protist 163:217-31. 2012
    ..Morphological and biochemical data were not available for all 89 taxa, however, existing data were consistent with the molecular phylogenetic tree, especially for the SIII clade...
  5. doi request reprint Ancient gene paralogy may mislead inference of plastid phylogeny
    Huan Qiu
    Bigelow Laboratory for Ocean Sciences, West Boothbay Harbor, ME, USA
    Mol Biol Evol 29:3333-43. 2012
    ..Our work uncovers a key, previously unappreciated aspect of organelle genome reduction and demonstrates "work-in-progress" models such as Paulinella to be critical to gain a fuller understanding of algal and plant genome evolution...
  6. doi request reprint Single-cell genomics reveals organismal interactions in uncultivated marine protists
    Hwan Su Yoon
    Bigelow Laboratory for Ocean Sciences, West Boothbay Harbor, ME 04575, USA
    Science 332:714-7. 2011
    ..By using shotgun sequencing of uncultured marine picobiliphytes, we revealed the distinct interactions of individual cells...
  7. ncbi request reprint A molecular timeline for the origin of photosynthetic eukaryotes
    Hwan Su Yoon
    Department of Biological Sciences and Center for Comparative Genomics, University of Iowa, Iowa, USA
    Mol Biol Evol 21:809-18. 2004
    ..e., acritarchs) from the early Mesoproterozoic (1,500 MYA) and with a major eukaryotic diversification in the very late Mesoproterozoic and Neoproterozoic, provide a molecular timeline for understanding algal evolution...
  8. ncbi request reprint Hidden biodiversity of the extremophilic Cyanidiales red algae
    Claudia Ciniglia
    Dipartimento di Biologia Vegetale, Universita Federico II, Via Foria 223, 80139 Napoli, Italy
    Mol Ecol 13:1827-38. 2004
    ..We predict that future environmental PCR studies will significantly augment known biodiversity that we have discovered and demonstrate the Cyanidiales to be a species-rich branch of red algal evolution...
  9. ncbi request reprint Phylogenomic analysis supports the monophyly of cryptophytes and haptophytes and the association of rhizaria with chromalveolates
    Jeremiah D Hackett
    Department of Biological Sciences and Roy J Carver Center for Comparative Genomics, University of Iowa, IA, USA
    Mol Biol Evol 24:1702-13. 2007
    ..The association of the two Rhizaria with chromalveolates is supported by the approximately unbiased (AU)-test and when the fastest evolving amino acid sites are removed from the 16-protein alignment...
  10. pmc Establishment of endolithic populations of extremophilic Cyanidiales (Rhodophyta)
    Hwan Su Yoon
    Department of Biological Sciences and Roy J, Carver Center for Comparative Genomics, University of Iowa, Iowa City, Iowa 52242, USA
    BMC Evol Biol 6:78. 2006
    ..Here, we conducted an environmental PCR survey of another extreme environment in Tuscany, Italy and contrasted Cyanidiales population structure at endolithic and interlithic habitats in Naples and Tuscany...
  11. pmc Insights into a dinoflagellate genome through expressed sequence tag analysis
    Jeremiah D Hackett
    Department of Biological Sciences and Roy J, Carver Center for Comparative Genomics, University of Iowa, Iowa City, IA 52242, USA
    BMC Genomics 6:80. 2005
    ..Previous analyses of these data have clarified plastid origin and here we study the gene content, annotate the ESTs, and analyze the genes that are putatively involved in DNA packaging...
  12. ncbi request reprint Tertiary endosymbiosis driven genome evolution in dinoflagellate algae
    Hwan Su Yoon
    Department of Biological Sciences and Roy J Carver Center for Comparative Genomics, University of Iowa, USA
    Mol Biol Evol 22:1299-308. 2005
    ..These results underline the remarkable ability of dinoflagellates to remodel their genomes through endosymbiosis and the considerable impact of this process on cell evolution...
  13. ncbi request reprint Migration of the plastid genome to the nucleus in a peridinin dinoflagellate
    Jeremiah D Hackett
    Department of Biological Sciences and Center for Comparative Genomics, The University of Iowa, Iowa City, IA 52242, USA
    Curr Biol 14:213-8. 2004
    ..tamarense. The plastid-targeted genes have red and green algal origins. These results highlight the unique position of dinoflagellates as the champions of plastid gene transfer to the nucleus among photosynthetic eukaryotes...
  14. ncbi request reprint Photosynthetic eukaryotes unite: endosymbiosis connects the dots
    Debashish Bhattacharya
    Department of Biological Sciences and Center for Comparative Genomics, University of Iowa, Iowa City, Iowa 52242 1324, USA
    Bioessays 26:50-60. 2004
    ..This area of research has advanced rapidly and long-standing issues such as the chromalveolate hypothesis and the extent of endosymbiotic gene transfer have recently been clarified...
  15. pmc The single, ancient origin of chromist plastids
    Hwan Su Yoon
    Department of Biological Sciences and Center for Comparative Genomics, University of Iowa, 210 Biology Building, Iowa City 52242, USA
    Proc Natl Acad Sci U S A 99:15507-12. 2002
    ..This finding is consistent with Chromista monophyly and implicates secondary endosymbiosis as an important force in generating eukaryotic biodiversity...
  16. pmc A single origin of the peridinin- and fucoxanthin-containing plastids in dinoflagellates through tertiary endosymbiosis
    Hwan Su Yoon
    Department of Biological Sciences and Center for Comparative Genomics, University of Iowa, Iowa City, IA 85542 1324, USA
    Proc Natl Acad Sci U S A 99:11724-9. 2002
    ..Our findings imply that the presence of chlorophylls c(1) + c(2) and fucoxanthin, and the Form I rbcL gene are in fact the primitive (not derived, as widely believed) condition in dinoflagellates...