Yuseob Kim

Summary

Affiliation: Arizona State University
Country: USA

Publications

  1. pmc Allele frequency distribution under recurrent selective sweeps
    Yuseob Kim
    Department of Biology, University of Rochester, Rochester, New York 14620, USA
    Genetics 172:1967-78. 2006
  2. doi request reprint The enrichment of TATA box and the scarcity of depleted proximal nucleosome in the promoters of duplicated yeast genes
    Yuseob Kim
    School of Life Sciences, Arizona State University, Tempe, AZ 85287, USA
    J Mol Evol 70:69-73. 2010
  3. pmc Signatures of recent directional selection under different models of population expansion during colonization of new selective environments
    Yuseob Kim
    Center of Rapid Evolution CORE, Department of Zoology, University of Wisconsin, Madison, Wisconsin 53705, USA
    Genetics 184:571-85. 2010
  4. ncbi request reprint Rate of adaptive peak shifts with partial genetic robustness
    Yuseob Kim
    The School of Life Sciences and the Center for Evolutionary Functional Genomics, The Biodesign Institute, Arizona State University, PO Box 875301, Tempe, Arizona 85287 5301, USA
    Evolution 61:1847-56. 2007
  5. pmc Approximations for the hitchhiking effect caused by the evolution of antimalarial-drug resistance
    Kristan A Schneider
    School of Life Sciences, Arizona State University, 1711 South Rural Road, Tempe, AZ 85287, USA
    J Math Biol 62:789-832. 2011
  6. pmc The dynamics of mutations associated with anti-malarial drug resistance in Plasmodium falciparum
    Ananias A Escalante
    School of Life Sciences, Arizona State University, PO Box 874501, Tempe, AZ 85287 4501, USA
    Trends Parasitol 25:557-63. 2009
  7. pmc Purifying selection modulates the estimates of population differentiation and confounds genome-wide comparisons across single-nucleotide polymorphisms
    Takahiro Maruki
    Center for Evolutionary Medicine and Informatics, The Biodesign Institute, Arizona State University
    Mol Biol Evol 29:3617-23. 2012
  8. pmc Hitchhiking effect of a beneficial mutation spreading in a subdivided population
    Yuseob Kim
    Center for Evolutionary Medicine and Informatics and School of Life Sciences, Arizona State University, Tempe, Arizona 85287, USA
    Genetics 189:213-26. 2011
  9. pmc Adaptation in sexuals vs. asexuals: clonal interference and the Fisher-Muller model
    Yuseob Kim
    Department of Biology, University of Rochester, Rochester, New York 14627, USA
    Genetics 171:1377-86. 2005
  10. pmc An analytical model for genetic hitchhiking in the evolution of antimalarial drug resistance
    Kristan A Schneider
    School of Life Sciences, Arizona State University, 1711 South Rural Road Tempe, AZ 85287, USA
    Theor Popul Biol 78:93-108. 2010

Detail Information

Publications19

  1. pmc Allele frequency distribution under recurrent selective sweeps
    Yuseob Kim
    Department of Biology, University of Rochester, Rochester, New York 14620, USA
    Genetics 172:1967-78. 2006
    ..It is shown that, using this approximation and multilocus polymorphism data, genomewide parameters of directional selection can be estimated...
  2. doi request reprint The enrichment of TATA box and the scarcity of depleted proximal nucleosome in the promoters of duplicated yeast genes
    Yuseob Kim
    School of Life Sciences, Arizona State University, Tempe, AZ 85287, USA
    J Mol Evol 70:69-73. 2010
    ..This suggests that variably expressed genes, due to the functional organization in their promoters, have higher duplicability than constitutively expressed genes...
  3. pmc Signatures of recent directional selection under different models of population expansion during colonization of new selective environments
    Yuseob Kim
    Center of Rapid Evolution CORE, Department of Zoology, University of Wisconsin, Madison, Wisconsin 53705, USA
    Genetics 184:571-85. 2010
    ..This result demonstrates the importance of correctly modeling the ecological process in inferring adaptive evolution using DNA sequence polymorphism...
  4. ncbi request reprint Rate of adaptive peak shifts with partial genetic robustness
    Yuseob Kim
    The School of Life Sciences and the Center for Evolutionary Functional Genomics, The Biodesign Institute, Arizona State University, PO Box 875301, Tempe, Arizona 85287 5301, USA
    Evolution 61:1847-56. 2007
    ..It is shown that peak shifts can be delayed or accelerated depending on the conditions of genetic robustness. The evolutionary significance of these processes is discussed...
  5. pmc Approximations for the hitchhiking effect caused by the evolution of antimalarial-drug resistance
    Kristan A Schneider
    School of Life Sciences, Arizona State University, 1711 South Rural Road, Tempe, AZ 85287, USA
    J Math Biol 62:789-832. 2011
    ..Reversely, for a given reduction of heterozygosity, it is possible to identify the corresponding parameters. Moreover, we will show that incorporating host heterogeneity leads to an increased hitchhiking effect...
  6. pmc The dynamics of mutations associated with anti-malarial drug resistance in Plasmodium falciparum
    Ananias A Escalante
    School of Life Sciences, Arizona State University, PO Box 874501, Tempe, AZ 85287 4501, USA
    Trends Parasitol 25:557-63. 2009
    ..falciparum requires approaches that consider the parasite population structure among other demographic processes...
  7. pmc Purifying selection modulates the estimates of population differentiation and confounds genome-wide comparisons across single-nucleotide polymorphisms
    Takahiro Maruki
    Center for Evolutionary Medicine and Informatics, The Biodesign Institute, Arizona State University
    Mol Biol Evol 29:3617-23. 2012
    ....
  8. pmc Hitchhiking effect of a beneficial mutation spreading in a subdivided population
    Yuseob Kim
    Center for Evolutionary Medicine and Informatics and School of Life Sciences, Arizona State University, Tempe, Arizona 85287, USA
    Genetics 189:213-26. 2011
    ..This raises a possibility of detecting a "hidden" geographic structure of population by carefully analyzing the pattern of a selective sweep...
  9. pmc Adaptation in sexuals vs. asexuals: clonal interference and the Fisher-Muller model
    Yuseob Kim
    Department of Biology, University of Rochester, Rochester, New York 14627, USA
    Genetics 171:1377-86. 2005
    ..We find that some of these statistics are surprisingly similar between sexuals and asexuals. These results highlight the importance of the choice of substitution model in assessing the Fisher-Muller advantage of sex...
  10. pmc An analytical model for genetic hitchhiking in the evolution of antimalarial drug resistance
    Kristan A Schneider
    School of Life Sciences, Arizona State University, 1711 South Rural Road Tempe, AZ 85287, USA
    Theor Popul Biol 78:93-108. 2010
    ..Finally, we show how to incorporate host heterogeneity, and generalize our results to this biologically more realistic case...
  11. pmc A pseudohitchhiking model of X vs. autosomal diversity
    Andrea J Betancourt
    Department of Biology, University of Rochester, Rochester, New York 14627, USA
    Genetics 168:2261-9. 2004
    ..autosomal diversity is reduced by hitchhiking under a broad range of conditions, but when there is no recombination in males, as in Drosophila, the required conditions are considerably more restrictive...
  12. ncbi request reprint Effect of strong directional selection on weakly selected mutations at linked sites: implication for synonymous codon usage
    Yuseob Kim
    Department of Biological Statistics and Computational Biology, Cornell University, New York, USA
    Mol Biol Evol 21:286-94. 2004
    ..It is shown that this observation can be reasonably well accounted for if a large fraction of the nonsynonymous substitutions on genes in the data set are driven by strong directional selection...
  13. pmc Pattern of polymorphism after strong artificial selection in a domestication event
    Hideki Innan
    Human Genetics Center, School of Public Health, University of Texas Health Science Center, Houston, TX 77030, USA
    Proc Natl Acad Sci U S A 101:10667-72. 2004
    ..These theoretical results are discussed in light of data collected from maize. Although the main focus of this article is on domestication, this model can also be generalized to describe selective sweeps from standing genetic variation...
  14. pmc Linkage disequilibrium as a signature of selective sweeps
    Yuseob Kim
    Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, New York 14853, USA
    Genetics 167:1513-24. 2004
    ..However, the improvement made by including LD is rather small, suggesting that most of the relevant information regarding selective sweeps is captured by the spatial distribution and marginal allele frequencies of polymorphisms...
  15. pmc Identification of a locus under complex positive selection in Drosophila simulans by haplotype mapping and composite-likelihood estimation
    Colin D Meiklejohn
    Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts 02138, USA
    Genetics 168:265-79. 2004
    ....
  16. pmc Detecting local adaptation using the joint sampling of polymorphism data in the parental and derived populations
    Hideki Innan
    Graduate University for Advanced Studies, Hayama, Kanagawa 240 0193, Japan
    Genetics 179:1713-20. 2008
    ..Therefore, for detecting the signature of local adaptation in polymorphism data, it is important to evaluate the data from both parental and derived populations simultaneously...
  17. pmc Distinguishing between selective sweeps and demography using DNA polymorphism data
    Jeffrey D Jensen
    Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853, USA
    Genetics 170:1401-10. 2005
    ....
  18. pmc Genomic scans for selective sweeps using SNP data
    Rasmus Nielsen
    Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, New York 14853, USA
    Genome Res 15:1566-75. 2005
    ..Evidence for selective sweeps is also found in many other regions, including genes known to be associated with disease risk such as DPP10 and COL4A3...
  19. pmc Selective sweeps in the presence of interference among partially linked loci
    Yuseob Kim
    Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, New York 14853, USA
    Genetics 164:389-98. 2003
    ..Analytical approximations are obtained for the case of complete linkage for which interference between competing beneficial alleles is maximal...