C S Giometti

Summary

Affiliation: Argonne National Laboratory
Country: USA

Publications

  1. pmc Transcriptional and proteomic analysis of a ferric uptake regulator (fur) mutant of Shewanella oneidensis: possible involvement of fur in energy metabolism, transcriptional regulation, and oxidative stress
    Dorothea K Thompson
    Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
    Appl Environ Microbiol 68:881-92. 2002
  2. pmc Knock-out of SO1377 gene, which encodes the member of a conserved hypothetical bacterial protein family COG2268, results in alteration of iron metabolism, increased spontaneous mutation and hydrogen peroxide sensitivity in Shewanella oneidensis MR-1
    Weimin Gao
    Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
    BMC Genomics 7:76. 2006
  3. ncbi request reprint Global analysis of a "simple" proteome: Methanococcus jannaschii
    Carol S Giometti
    Biosciences Division, Argonne National Laboratory, 9700 South Cass Avenue, Building 202, Room B117, Argonne, IL 60439, USA
    J Chromatogr B Analyt Technol Biomed Life Sci 782:227-43. 2002
  4. ncbi request reprint Analysis of the Shewanella oneidensis proteome by two-dimensional gel electrophoresis under nondenaturing conditions
    Carol S Giometti
    Argonne National Laboratory, Biosciences Division, Argonne, IL 60439, USA
    Proteomics 3:777-85. 2003
  5. ncbi request reprint Structural modifications of Methanococcus jannaschii flagellin proteins revealed by proteome analysis
    C S Giometti
    Biosciences Division, Argonne National Laboratory, IL 60439, USA
    Proteomics 1:1033-42. 2001
  6. ncbi request reprint Mouse liver selenium-binding protein decreased in abundance by peroxisome proliferators
    C S Giometti
    Biosciences Division, Argonne Laboratory, IL 60439, USA
    Electrophoresis 21:2162-9. 2000
  7. ncbi request reprint A comparison of liver protein changes in mice and hamsters treated with the peroxisome proliferator Wy-14,643
    C S Giometti
    Center for Mechanistic Biology and Biotechnology, Argonne National Laboratory, IL 60439, USA
    Electrophoresis 19:2498-505. 1998
  8. ncbi request reprint A two-dimensional electrophoresis database of human breast epithelial cell proteins
    C S Giometti
    Center for Mechanistic Biology and Biotechnology, Argonne National Laboratory, IL 60439, USA
    Electrophoresis 18:573-81. 1997
  9. pmc Identification of a heritable deficiency of the folate-dependent enzyme 10-formyltetrahydrofolate dehydrogenase in mice
    K M Champion
    Center for Mechanistic Biology and Biotechnology, Argonne National Laboratory, IL 60439 4833
    Proc Natl Acad Sci U S A 91:11338-42. 1994
  10. ncbi request reprint The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins
    C S Giometti
    Biological and Medical Research Division, Argonne National Laboratory, IL 60439
    Mutat Res 242:47-55. 1990

Collaborators

Detail Information

Publications30

  1. pmc Transcriptional and proteomic analysis of a ferric uptake regulator (fur) mutant of Shewanella oneidensis: possible involvement of fur in energy metabolism, transcriptional regulation, and oxidative stress
    Dorothea K Thompson
    Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
    Appl Environ Microbiol 68:881-92. 2002
    ..These results suggest a possible regulatory role of S. oneidensis MR-1 Fur in energy metabolism that extends the traditional model of Fur as a negative regulator of iron acquisition systems...
  2. pmc Knock-out of SO1377 gene, which encodes the member of a conserved hypothetical bacterial protein family COG2268, results in alteration of iron metabolism, increased spontaneous mutation and hydrogen peroxide sensitivity in Shewanella oneidensis MR-1
    Weimin Gao
    Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
    BMC Genomics 7:76. 2006
    ....
  3. ncbi request reprint Global analysis of a "simple" proteome: Methanococcus jannaschii
    Carol S Giometti
    Biosciences Division, Argonne National Laboratory, 9700 South Cass Avenue, Building 202, Room B117, Argonne, IL 60439, USA
    J Chromatogr B Analyt Technol Biomed Life Sci 782:227-43. 2002
    ..jannaschii proteins has been found, as well as indications of incomplete dissociation of protein-protein complexes. These results demonstrate the complexity of proteome analysis even when dealing with a relatively simple genome...
  4. ncbi request reprint Analysis of the Shewanella oneidensis proteome by two-dimensional gel electrophoresis under nondenaturing conditions
    Carol S Giometti
    Argonne National Laboratory, Biosciences Division, Argonne, IL 60439, USA
    Proteomics 3:777-85. 2003
    ..We have also found protein interactions within both the soluble and membrane fractions. The method described will be useful for the characterization of the functional proteomes of microbial systems...
  5. ncbi request reprint Structural modifications of Methanococcus jannaschii flagellin proteins revealed by proteome analysis
    C S Giometti
    Biosciences Division, Argonne National Laboratory, IL 60439, USA
    Proteomics 1:1033-42. 2001
    ..jannaschii and further suggest the regulation of M. jannaschii motility through structural modifications of the building blocks of the flagella...
  6. ncbi request reprint Mouse liver selenium-binding protein decreased in abundance by peroxisome proliferators
    C S Giometti
    Biosciences Division, Argonne Laboratory, IL 60439, USA
    Electrophoresis 21:2162-9. 2000
    ..Such a decrease in SBP, thought to serve as cell growth regulation factors, could be central to the nongenotoxic carcinogenicity of the peroxisome proliferators observed in rodents...
  7. ncbi request reprint A comparison of liver protein changes in mice and hamsters treated with the peroxisome proliferator Wy-14,643
    C S Giometti
    Center for Mechanistic Biology and Biotechnology, Argonne National Laboratory, IL 60439, USA
    Electrophoresis 19:2498-505. 1998
    ....
  8. ncbi request reprint A two-dimensional electrophoresis database of human breast epithelial cell proteins
    C S Giometti
    Center for Mechanistic Biology and Biotechnology, Argonne National Laboratory, IL 60439, USA
    Electrophoresis 18:573-81. 1997
    ..The World Wide Web presentation is designed to allow public access to the available 2-DE data together with logical connections to databases providing genome-related information...
  9. pmc Identification of a heritable deficiency of the folate-dependent enzyme 10-formyltetrahydrofolate dehydrogenase in mice
    K M Champion
    Center for Mechanistic Biology and Biotechnology, Argonne National Laboratory, IL 60439 4833
    Proc Natl Acad Sci U S A 91:11338-42. 1994
    ..Measurement of hepatic folate pools showed that in homozygotes the total folate pool is decreased and the level of tetrahydrofolate is markedly depleted...
  10. ncbi request reprint The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins
    C S Giometti
    Biological and Medical Research Division, Argonne National Laboratory, IL 60439
    Mutat Res 242:47-55. 1990
    ..No significant quantitative decreases in protein expression that correlated with the recessive lethal mutations were detected, however...
  11. ncbi request reprint Mouse liver protein database: a catalog of proteins detected by two-dimensional gel electrophoresis
    C S Giometti
    Biological and Medical Research Division, Argonne National Laboratory, IL 60439
    Electrophoresis 13:970-91. 1992
    ....
  12. pmc GELBANK: a database of annotated two-dimensional gel electrophoresis patterns of biological systems with completed genomes
    Gyorgy Babnigg
    Protein Mapping Group, Biosciences Division, Argonne National Laboratory, Argonne, IL 60439, USA
    Nucleic Acids Res 32:D582-5. 2004
    ..The website currently presents 233 identifications for 81 gel patterns for Homo sapiens, Methanococcus jannaschii, Pyro coccus furiosus, Shewanella oneidensis, Escherichia coli and Deinococcus radiodurans...
  13. ncbi request reprint ProteomeWeb: a web-based interface for the display and interrogation of proteomes
    Gyorgy Babnigg
    Biosciences Division, Argonne National Laboratory, Argonne, IL 60439, USA
    Proteomics 3:584-600. 2003
    ..The proteome of the archaeon Methanococcus jannaschii, a microbe for which the complete genome sequence is available, is used to demonstrate the capabilities of this evolving web interface (http://proteomeweb.anl.gov)...
  14. ncbi request reprint Altered protein expression detected in the F1 offspring of male mice exposed to fission neutrons
    C S Giometti
    Biological and Medical Research Division, Argonne National Laboratory, IL 60439
    Mutat Res 320:75-85. 1994
    ..These 2 mutations may thus represent mutation lesions other than point mutations (e.g., deletions or translocations) detectable as quantitative changes in protein expression in the F1 generation...
  15. ncbi request reprint Tale of two metal reducers: comparative proteome analysis of Geobacter sulferreducens PCA and Shewanella oneidensis MR-1
    Carol S Giometti
    Argonne National Laboratory, Argonne, Illinois, USA
    Methods Biochem Anal 49:97-111. 2006
    ..The end result, in the not too distant future, will be predictive models of G. sulfurreducens and S. oneidensis behavior in their natural habitats under a variety of environmental conditions...
  16. ncbi request reprint Steady state protein levels in Geobacter metallireducens grown with iron (III) citrate or nitrate as terminal electron acceptor
    Angela J Ahrendt
    Argonne National Laboratory, Biosciences Division, Argonne, IL, USA
    Proteomics 7:4148-57. 2007
    ..The oxidative stress response observed in previous studies of Geobacter sulfurreducens grown with Fe(III) citrate was not seen in G. metallireducens...
  17. ncbi request reprint A combinatorial approach to studying protein complex composition by employing size-exclusion chromatography and proteome analysis
    Shi Sheng Li
    Biosciences Division, Argonne National Laboratory, Argonne, IL 60439, USA
    J Sep Sci 30:1549-55. 2007
    ..In one case, the partners of the B. subtilis protein complex have been coexpressed in Escherichia coli, and the formation of the overexpressed protein complex has been further confirmed by a pull-down assay...
  18. ncbi request reprint A database of unique protein sequence identifiers for proteome studies
    Gyorgy Babnigg
    Protein Mapping Group, Biosceinces Division, Argonne National Laboratory, IL 60439, USA
    Proteomics 6:4514-22. 2006
    ....
  19. ncbi request reprint Differential protein expression in the metal-reducing bacterium Geobacter sulfurreducens strain PCA grown with fumarate or ferric citrate
    Tripti Khare
    Argonne National Laboratory, Argonne, Illinois 60439, USA
    Proteomics 6:632-40. 2006
    ..Although an anaerobe, G. sulfurreducens appears to have alternate mechanisms for dealing with reactive oxygen species in response to increased intracellular soluble iron...
  20. ncbi request reprint Proteomics and bioinformatics
    Carol S Giometti
    Argonne National Laboratory, Argonne, Illinois 60439, USA
    Adv Protein Chem 65:353-69. 2003
  21. ncbi request reprint Differential recovery of biotinylated microbial proteins using monomeric or polymeric avidin
    Tripti Khare
    Argonne National Laboratory, Argonne, IL 60439, USA
    Biotechniques 40:584, 586, 588. 2006
  22. ncbi request reprint The proteome of dissimilatory metal-reducing microorganism Geobacter sulfurreducens under various growth conditions
    Yan Huai R Ding
    Department of Microbiology, University of Massachusetts, Amherst, MA 01002, USA
    Biochim Biophys Acta 1764:1198-206. 2006
    ..sulfurreducens genome are produced and that the AMT tag approach provides a rapid method for comparing differential expression of proteins under different growth conditions in this organism...
  23. ncbi request reprint Gene and protein expression profiles of Shewanella oneidensis during anaerobic growth with different electron acceptors
    Alex S Beliaev
    Environmental Sciences Division, Oak Ridge National Laboratory, Tennessee 37831 6038, USA
    OMICS 6:39-60. 2002
    ..Protein identification by mass spectrometry indicated that the expression of prismane, dihydrolipoamide succinyltransferase, and alcaligin siderophore biosynthesis protein correlated with the microarray data...
  24. pmc Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations
    Eugene Kolker
    BIATECH, 19310 North Creek Parkway, Suite 115, Bothell, WA 98011, USA
    Proc Natl Acad Sci U S A 102:2099-104. 2005
    ..We propose that this integrative approach offers a valuable means to undertake the enormous challenge of characterizing the rapidly growing number of hypothetical proteins with each newly sequenced genome...
  25. ncbi request reprint Shotgun proteomics of Methanococcus jannaschii and insights into methanogenesis
    Wenhong Zhu
    Department of Cell Biology, The Scripps Research Institute, 10550 N Torrey Pines Rd, La Jolla, California 92037, USA
    J Proteome Res 3:538-48. 2004
    ..New peptides created by protein splicing were detected in MJ0885 (DNA dependent DNA polymerase), MJ0542, and MJ0782. The methanogenesis pathway and the enzymes involved are also discussed...
  26. ncbi request reprint Identification of 2D-gel proteins: a comparison of MALDI/TOF peptide mass mapping to mu LC-ESI tandem mass spectrometry
    Hanjo Lim
    Department of Cell Biology, The Scripps Research Institute, La Jolla, California 92037, USA
    J Am Soc Mass Spectrom 14:957-70. 2003
    ..This improved sequence coverage in combination with enzymatic digestions of different specificity is proposed as a method for analysis of post-translational modification from 2D-gel separated proteins...
  27. pmc The influence of cultivation methods on Shewanella oneidensis physiology and proteome expression
    Dwayne A Elias
    Department of Biochemistry, University of Missouri Columbia, Columbia, MO 65211, USA
    Arch Microbiol 189:313-24. 2008
    ..By decreasing cell to cell variability, higher quality samples will allow for the interpretive accuracy necessary for drawing conclusions relevant to microbial systems biology research...
  28. ncbi request reprint Large-scale muLC-MS/MS for silver- and Coomassie blue-stained polyacrylamide gels
    Wenhong Zhu
    Department of Cell Biology, The Scripps Research Institute, La Jolla, CA 92037, USA
    Electrophoresis 26:4495-507. 2005
    ..Although silver staining is not commonly thought to be optimal for MS analysis, protein identifications were successfully obtained from silver-stained 2-DE spots detected using methods with and without formaldehyde for protein fixation...
  29. pmc Low-temperature growth of Shewanella oneidensis MR-1
    Randa Abboud
    Department of Biological Sciences, 3651 Trousdale Pkwy, AHF 107, University of Southern California, Los Angeles, CA 90089 0371, USA
    Appl Environ Microbiol 71:811-6. 2005
    ..Frequent pilus-like structures were observed during the transition from 3 to 22 degrees C...
  30. ncbi request reprint Proteomic analysis of Psychrobacter cryohalolentis K5 during growth at subzero temperatures
    Corien Bakermans
    Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA
    Extremophiles 11:343-54. 2007
    ..In summary, these data suggest that low-temperature stresses continue to intensify as growth temperatures decrease to -4 degrees C...