F R Collart

Summary

Affiliation: Argonne National Laboratory
Country: USA

Publications

  1. pmc Using deep RNA sequencing for the structural annotation of the Laccaria bicolor mycorrhizal transcriptome
    Peter E Larsen
    Biosciences Division, Argonne National Laboratory, Lemont, Illinois, United States of America
    PLoS ONE 5:e9780. 2010
  2. pmc BowStrap v1.0: Assigning statistical significance to expressed genes using short-read transcriptome data
    Peter E Larsen
    Biosciences Division, Argonne National Laboratory, Lemont, IL, 60490, USA
    BMC Res Notes 5:275. 2012
  3. pmc Predicted Relative Metabolomic Turnover (PRMT): determining metabolic turnover from a coastal marine metagenomic dataset
    Peter E Larsen
    Argonne National Laboratory, 9700, S, Cass Ave, Argonne, Illinois, USA
    Microb Inform Exp 1:4. 2011
  4. pmc Using next generation transcriptome sequencing to predict an ectomycorrhizal metabolome
    Peter E Larsen
    Biosciences Division, Argonne National Laboratory, Lemont, IL 60490, USA
    BMC Syst Biol 5:70. 2011
  5. pmc Environment sensing and response mediated by ABC transporters
    Sarah E Giuliani
    Biosciences Division, Argonne National Laboratory, Lemont, IL 60490, USA
    BMC Genomics 12:S8. 2011
  6. ncbi request reprint Characteristics and crystal structure of bacterial inosine-5'-monophosphate dehydrogenase
    R Zhang
    Center for Mechanistic Biology and Biotechnology, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, Illinois 60439 4833, USA
    Biochemistry 38:4691-700. 1999
  7. ncbi request reprint Differential signatures of bacterial and mammalian IMP dehydrogenase enzymes
    R Zhang
    Biosciences Division, Argonne National Laboratory
    Curr Med Chem 6:537-43. 1999
  8. ncbi request reprint Bacterial expression strategies for human angiogenesis proteins
    L J Dieckman
    Biosciences Research Division, Argonne National Laboratory, Argonne, IL 60439, USA
    J Struct Funct Genomics 7:23-30. 2006
  9. ncbi request reprint Genome-scale expression of proteins from Bacillus subtilis
    S Moy
    Biosciences Division, Argonne National Laboratory, Argonne, IL 60439, USA
    J Struct Funct Genomics 5:103-9. 2004
  10. ncbi request reprint Efficient recognition of protein fold at low sequence identity by conservative application of Psi-BLAST: application
    F J Stevens
    Biosciences Division, Argonne National Laboratory, Argonne, IL 60439, USA
    J Mol Recognit 18:150-7. 2005

Collaborators

Detail Information

Publications16

  1. pmc Using deep RNA sequencing for the structural annotation of the Laccaria bicolor mycorrhizal transcriptome
    Peter E Larsen
    Biosciences Division, Argonne National Laboratory, Lemont, Illinois, United States of America
    PLoS ONE 5:e9780. 2010
    ..The ease of acquisition of transcriptomic sequence provides a direct route to identify expressed sequences and determine the correct gene structure...
  2. pmc BowStrap v1.0: Assigning statistical significance to expressed genes using short-read transcriptome data
    Peter E Larsen
    Biosciences Division, Argonne National Laboratory, Lemont, IL, 60490, USA
    BMC Res Notes 5:275. 2012
    ..However, accurate determination of gene model expression from deep RNA sequencing is hindered by the presence of ambiguously aligning short read sequences...
  3. pmc Predicted Relative Metabolomic Turnover (PRMT): determining metabolic turnover from a coastal marine metagenomic dataset
    Peter E Larsen
    Argonne National Laboratory, 9700, S, Cass Ave, Argonne, Illinois, USA
    Microb Inform Exp 1:4. 2011
    ..abstract:..
  4. pmc Using next generation transcriptome sequencing to predict an ectomycorrhizal metabolome
    Peter E Larsen
    Biosciences Division, Argonne National Laboratory, Lemont, IL 60490, USA
    BMC Syst Biol 5:70. 2011
    ..Understanding this symbiotic relationship at a molecular level provides important contributions to the understanding of forest ecosystems and global carbon cycling...
  5. pmc Environment sensing and response mediated by ABC transporters
    Sarah E Giuliani
    Biosciences Division, Argonne National Laboratory, Lemont, IL 60490, USA
    BMC Genomics 12:S8. 2011
    ....
  6. ncbi request reprint Characteristics and crystal structure of bacterial inosine-5'-monophosphate dehydrogenase
    R Zhang
    Center for Mechanistic Biology and Biotechnology, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, Illinois 60439 4833, USA
    Biochemistry 38:4691-700. 1999
    ..Comparison of the structure of bacterial IMPDH with the known partial structures from eukaryotic organisms will provide an explanation of their distinct properties and contribute to the design of specific bacterial IMPDH inhibitors...
  7. ncbi request reprint Differential signatures of bacterial and mammalian IMP dehydrogenase enzymes
    R Zhang
    Biosciences Division, Argonne National Laboratory
    Curr Med Chem 6:537-43. 1999
    ..Elucidation of the basis for this mammalian/bacterial IMPDH signature will provide insight into the catalytic mechanism of this enzyme and the foundation for the development of highly specific inhibitors...
  8. ncbi request reprint Bacterial expression strategies for human angiogenesis proteins
    L J Dieckman
    Biosciences Research Division, Argonne National Laboratory, Argonne, IL 60439, USA
    J Struct Funct Genomics 7:23-30. 2006
    ..These results validate the utility of a bioinformatically driven high throughput approach to increase the number of soluble proteins or protein domains which can be used for multiple downstream applications...
  9. ncbi request reprint Genome-scale expression of proteins from Bacillus subtilis
    S Moy
    Biosciences Division, Argonne National Laboratory, Argonne, IL 60439, USA
    J Struct Funct Genomics 5:103-9. 2004
    ..The continued development of new technologies that can be implemented in an automated format will be essential for continued success in the structural genomic programs...
  10. ncbi request reprint Efficient recognition of protein fold at low sequence identity by conservative application of Psi-BLAST: application
    F J Stevens
    Biosciences Division, Argonne National Laboratory, Argonne, IL 60439, USA
    J Mol Recognit 18:150-7. 2005
    ..This approach significantly expands the utility of existing sequence data to define the primary structure degeneracy of binding sites for substrates, cofactors and other proteins...
  11. ncbi request reprint Cloning, characterization and sequence comparison of the gene coding for IMP dehydrogenase from Pyrococcus furiosus
    F R Collart
    Center for Mechanistic Biology and Biotechnology, Argonne National Laboratory, IL 60439, USA
    Gene 174:209-16. 1996
    ..The phylogenetic analysis indicates that a gene duplication occurred prior to the division between rodents and humans, accounting for the Type I and II isoforms identified in mice and humans...
  12. ncbi request reprint Express primer tool for high-throughput gene cloning and expression
    J R Yoon
    Argonne National Laboratory, Argonne, IL, USA
    Biotechniques 33:1328-33. 2002
    ....
  13. ncbi request reprint Cloning and sequence analysis of the human and Chinese hamster inosine-5'-monophosphate dehydrogenase cDNAs
    F R Collart
    Biological, Environmental, and Medical Research Division, Argonne National Laboratory, Illinois 60439 4833
    J Biol Chem 263:15769-72. 1988
    ..Comparison of the protein sequences deduced from the human and Chinese hamster cDNA clones indicates only eight amino acid differences, suggesting that IMP dehydrogenase is a highly conserved protein...
  14. ncbi request reprint A protein containing the cystic fibrosis antigen is an inhibitor of protein kinases
    S Murao
    Division of Biological, Environmental and Medical Research, Argonne National Laboratory, Illinois 60439 4833
    J Biol Chem 264:8356-60. 1989
    ....
  15. ncbi request reprint Recombinant human inosine monophosphate dehydrogenase type I and type II proteins. Purification and characterization of inhibitor binding
    P W Hager
    Department of Pharmacology, University of North Carolina at Chapel Hill 27514, USA
    Biochem Pharmacol 49:1323-9. 1995
    ..Thus, MMP is a potent, tight-binding competitive inhibitor that does not discriminate between the two IMPDH isozymes...
  16. ncbi request reprint Increased inosine-5'-phosphate dehydrogenase gene expression in solid tumor tissues and tumor cell lines
    F R Collart
    Biological and Medical Research Division, Argonne National Laboratory, Illinois 60439
    Cancer Res 52:5826-8. 1992
    ..These results are consistent with an association between increased IMP dehydrogenase expression and either enhanced cell proliferation or malignant transformation...