T Andrew Binkowski

Summary

Affiliation: Argonne National Laboratory
Country: USA

Publications

  1. pmc Topology independent protein structural alignment
    Joe Dundas
    Department of Bioengineering, University of Illinois at Chicago, Chicago, IL 60607 7053, USA
    BMC Bioinformatics 8:388. 2007
  2. pmc Protein functional surfaces: global shape matching and local spatial alignments of ligand binding sites
    T Andrew Binkowski
    Midwest Center for Structural Genomics and Structural Biology Center, Biosciences Division, Argonne National Laboratory, Argonne, Illinois 60439, USA
    BMC Struct Biol 8:45. 2008
  3. pmc Assisted assignment of ligands corresponding to unknown electron density
    T Andrew Binkowski
    Midwest Center for Structural Genomics MCSG, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, IL 60439, USA
    J Struct Funct Genomics 11:21-30. 2010
  4. pmc Predicting HLA class I non-permissive amino acid residues substitutions
    T Andrew Binkowski
    Biosciences Division, Argonne National Laboratory, Midwest Center for Structural Genomics, Argonne, Illinois, United States of America
    PLoS ONE 7:e41710. 2012

Collaborators

Detail Information

Publications4

  1. pmc Topology independent protein structural alignment
    Joe Dundas
    Department of Bioengineering, University of Illinois at Chicago, Chicago, IL 60607 7053, USA
    BMC Bioinformatics 8:388. 2007
    ..The resulting structural alignment is sequence order independent. Our method is also insensitive to insertions, deletions, and gaps...
  2. pmc Protein functional surfaces: global shape matching and local spatial alignments of ligand binding sites
    T Andrew Binkowski
    Midwest Center for Structural Genomics and Structural Biology Center, Biosciences Division, Argonne National Laboratory, Argonne, Illinois 60439, USA
    BMC Struct Biol 8:45. 2008
    ..While biochemical activity can be attributed to a few key residues, the broader surrounding environment plays an equally important role...
  3. pmc Assisted assignment of ligands corresponding to unknown electron density
    T Andrew Binkowski
    Midwest Center for Structural Genomics MCSG, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, IL 60439, USA
    J Struct Funct Genomics 11:21-30. 2010
    ..The method is validated against highly observed ligands from the Protein Data Bank and results are shown from its use in a high-throughput structural genomics pipeline...
  4. pmc Predicting HLA class I non-permissive amino acid residues substitutions
    T Andrew Binkowski
    Biosciences Division, Argonne National Laboratory, Midwest Center for Structural Genomics, Argonne, Illinois, United States of America
    PLoS ONE 7:e41710. 2012
    ..The effect on binding activity across a large set of high-affinity peptides is used to investigate amino acid mismatches reported as high-risk factors in hematopoietic stem cell transplantation...