Affiliation: Applied Biosystems
- Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encodingKevin Judd McKernan
Life Technologies, Beverly, Massachusetts 01915, USA
Genome Res 19:1527-41. 2009..There is more genetic variation in the human genome still to be uncovered, and we provide guidance for future surveys in populations and cancer biopsies...
- Differential binding and co-binding pattern of FOXA1 and FOXA3 and their relation to H3K4me3 in HepG2 cells revealed by ChIP-seqMehdi Motallebipour
Department of Genetics and Pathology, Uppsala University, Rudbeck Laboratory, Dag Hammarskjölds väg 20, Uppsala SE 75185, Sweden
Genome Biol 10:R129. 2009..The forkhead box/winged helix family members FOXA1, FOXA2, and FOXA3 are of high importance in development and specification of the hepatic linage and the continued expression of liver-specific genes...
- ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired readsIain MacCallum
Broad Institute of MIT and Harvard, Charles Street, Cambridge, MA 02141, USA
Genome Biol 10:R103. 2009..Velvet and EULER-SR were less accurate. For example, for Escherichia coli, the fraction of 10-kb stretches that were perfect was 99.8% (ALLPATHS2), 68.7% (Velvet), and 42.1% (EULER-SR)...