Kevin McKernan

Summary

Affiliation: Applied Biosystems
Country: USA

Publications

  1. ncbi Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding
    Kevin Judd McKernan
    Life Technologies, Beverly, Massachusetts 01915, USA
    Genome Res 19:1527-41. 2009
  2. ncbi Differential binding and co-binding pattern of FOXA1 and FOXA3 and their relation to H3K4me3 in HepG2 cells revealed by ChIP-seq
    Mehdi Motallebipour
    Department of Genetics and Pathology, Uppsala University, Rudbeck Laboratory, Dag Hammarskjölds väg 20, Uppsala SE 75185, Sweden
    Genome Biol 10:R129. 2009
  3. ncbi ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads
    Iain MacCallum
    Broad Institute of MIT and Harvard, Charles Street, Cambridge, MA 02141, USA
    Genome Biol 10:R103. 2009

Collaborators

  • Vineet Bafna
  • Evan E Eichler
  • Ali Bashir
  • Alena A Antipova
  • Mehdi Motallebipour
  • Iain MacCallum
  • Claes Wadelius
  • Kalicharan Patra
  • Melissa A Barker
  • Jonathan Mangion
  • Joel Malek
  • Joshua Burton
  • Louise Williams
  • Sarah Young
  • Terrance P Shea
  • Adam Ameur
  • Swati Ranade
  • Madhu Sudhan Reddy Bysani
  • Ola Wallerman
  • Chad Nusbaum
  • Dariusz Przybylski
  • David B Jaffe
  • Ilya Shlyakhter
  • Sante Gnerre
  • Andreas Gnirke
  • Jan Komorowski

Detail Information

Publications3

  1. ncbi Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding
    Kevin Judd McKernan
    Life Technologies, Beverly, Massachusetts 01915, USA
    Genome Res 19:1527-41. 2009
    ..There is more genetic variation in the human genome still to be uncovered, and we provide guidance for future surveys in populations and cancer biopsies...
  2. ncbi Differential binding and co-binding pattern of FOXA1 and FOXA3 and their relation to H3K4me3 in HepG2 cells revealed by ChIP-seq
    Mehdi Motallebipour
    Department of Genetics and Pathology, Uppsala University, Rudbeck Laboratory, Dag Hammarskjölds väg 20, Uppsala SE 75185, Sweden
    Genome Biol 10:R129. 2009
    ..The forkhead box/winged helix family members FOXA1, FOXA2, and FOXA3 are of high importance in development and specification of the hepatic linage and the continued expression of liver-specific genes...
  3. ncbi ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads
    Iain MacCallum
    Broad Institute of MIT and Harvard, Charles Street, Cambridge, MA 02141, USA
    Genome Biol 10:R103. 2009
    ..Velvet and EULER-SR were less accurate. For example, for Escherichia coli, the fraction of 10-kb stretches that were perfect was 99.8% (ALLPATHS2), 68.7% (Velvet), and 42.1% (EULER-SR)...