Kevin McKernan

Summary

Affiliation: Applied Biosystems
Country: USA

Publications

  1. pmc Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding
    Kevin Judd McKernan
    Life Technologies, Beverly, Massachusetts 01915, USA
    Genome Res 19:1527-41. 2009
  2. pmc Differential binding and co-binding pattern of FOXA1 and FOXA3 and their relation to H3K4me3 in HepG2 cells revealed by ChIP-seq
    Mehdi Motallebipour
    Department of Genetics and Pathology, Uppsala University, Rudbeck Laboratory, Dag Hammarskjölds väg 20, Uppsala SE 75185, Sweden
    Genome Biol 10:R129. 2009
  3. pmc ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads
    Iain MacCallum
    Broad Institute of MIT and Harvard, Charles Street, Cambridge, MA 02141, USA
    Genome Biol 10:R103. 2009

Collaborators

  • Vineet Bafna
  • Evan E Eichler
  • Alena A Antipova
  • Ali Bashir
  • Mehdi Motallebipour
  • Iain MacCallum
  • Claes Wadelius
  • Ilya Shlyakhter
  • Joshua Burton
  • Andreas Gnirke
  • Louise Williams
  • Madhu Sudhan Reddy Bysani
  • Dariusz Przybylski
  • Jan Komorowski
  • Joel Malek
  • Kalicharan Patra
  • Sarah Young
  • Sante Gnerre
  • Jonathan Mangion
  • David B Jaffe
  • Swati Ranade
  • Melissa A Barker
  • Terrance P Shea
  • Ola Wallerman
  • Chad Nusbaum
  • Adam Ameur

Detail Information

Publications3

  1. pmc Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding
    Kevin Judd McKernan
    Life Technologies, Beverly, Massachusetts 01915, USA
    Genome Res 19:1527-41. 2009
    ..There is more genetic variation in the human genome still to be uncovered, and we provide guidance for future surveys in populations and cancer biopsies...
  2. pmc Differential binding and co-binding pattern of FOXA1 and FOXA3 and their relation to H3K4me3 in HepG2 cells revealed by ChIP-seq
    Mehdi Motallebipour
    Department of Genetics and Pathology, Uppsala University, Rudbeck Laboratory, Dag Hammarskjölds väg 20, Uppsala SE 75185, Sweden
    Genome Biol 10:R129. 2009
    ..The forkhead box/winged helix family members FOXA1, FOXA2, and FOXA3 are of high importance in development and specification of the hepatic linage and the continued expression of liver-specific genes...
  3. pmc ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads
    Iain MacCallum
    Broad Institute of MIT and Harvard, Charles Street, Cambridge, MA 02141, USA
    Genome Biol 10:R103. 2009
    ..Velvet and EULER-SR were less accurate. For example, for Escherichia coli, the fraction of 10-kb stretches that were perfect was 99.8% (ALLPATHS2), 68.7% (Velvet), and 42.1% (EULER-SR)...