S Samuel Yang

Summary

Affiliation: Agricultural Research Service
Country: USA

Publications

  1. pmc Single-feature polymorphism discovery by computing probe affinity shape powers
    Wayne Wenzhong Xu
    Supercomputing Institute for Advanced Computational Research, University of Minnesota, Minnesota, MN 55455, USA
    BMC Genet 10:48. 2009
  2. pmc Transcript profiling of common bean (Phaseolus vulgaris L.) using the GeneChip Soybean Genome Array: optimizing analysis by masking biased probes
    S Samuel Yang
    USDA Agricultural Research Service, Plant Science Research, St Paul, MN 55108, USA
    BMC Plant Biol 10:85. 2010
  3. pmc Transcript profiling of two alfalfa genotypes with contrasting cell wall composition in stems using a cross-species platform: optimizing analysis by masking biased probes
    S Samuel Yang
    USDA Agricultural Research Service, Plant Science Research Unit, St, Paul, MN 55108, USA
    BMC Genomics 11:323. 2010
  4. pmc Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems
    S Samuel Yang
    USDA Agricultural Research Service, Plant Science Research Unit, St, Paul, MN 55108, USA
    BMC Genomics 12:199. 2011
  5. pmc An RNA-Seq transcriptome analysis of orthophosphate-deficient white lupin reveals novel insights into phosphorus acclimation in plants
    Jamie A O'Rourke
    United States Department of Agriculture Agricultural Research Service, Plant Science Research Unit, St Paul, Minnesota 55108, USA
    Plant Physiol 161:705-24. 2013

Detail Information

Publications5

  1. pmc Single-feature polymorphism discovery by computing probe affinity shape powers
    Wayne Wenzhong Xu
    Supercomputing Institute for Advanced Computational Research, University of Minnesota, Minnesota, MN 55455, USA
    BMC Genet 10:48. 2009
    ..However, high false positive rates and/or low sensitivity are prevalent in previously described SFP detection methods. This work presents a new computing method for SFP discovery...
  2. pmc Transcript profiling of common bean (Phaseolus vulgaris L.) using the GeneChip Soybean Genome Array: optimizing analysis by masking biased probes
    S Samuel Yang
    USDA Agricultural Research Service, Plant Science Research, St Paul, MN 55108, USA
    BMC Plant Biol 10:85. 2010
    ..This suggests that the GeneChip(R) Soybean Genome Array (soybean GeneChip) may be used for gene expression studies using common bean...
  3. pmc Transcript profiling of two alfalfa genotypes with contrasting cell wall composition in stems using a cross-species platform: optimizing analysis by masking biased probes
    S Samuel Yang
    USDA Agricultural Research Service, Plant Science Research Unit, St, Paul, MN 55108, USA
    BMC Genomics 11:323. 2010
    ....
  4. pmc Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems
    S Samuel Yang
    USDA Agricultural Research Service, Plant Science Research Unit, St, Paul, MN 55108, USA
    BMC Genomics 12:199. 2011
    ..The recent advent of RNA-Seq, a massively parallel sequencing method for transcriptome analysis, provides an opportunity to expand the identification of alfalfa genes and polymorphisms, and conduct in-depth transcript profiling...
  5. pmc An RNA-Seq transcriptome analysis of orthophosphate-deficient white lupin reveals novel insights into phosphorus acclimation in plants
    Jamie A O'Rourke
    United States Department of Agriculture Agricultural Research Service, Plant Science Research Unit, St Paul, Minnesota 55108, USA
    Plant Physiol 161:705-24. 2013
    ..This global gene expression analysis provides new insights into the biochemical and molecular mechanisms involved in the acclimation to P(i) deficiency...