Xianghe Yan

Summary

Affiliation: USDA-ARS
Location: Wyndmoor, USA

Publications

  1. pmc Origination of Ds elements from Ac elements in maize: evidence for rare repair synthesis at the site of Ac excision
    X Yan
    The Waksman Institute, Rutgers University, Piscataway, New Jersey 08855, USA
    Genetics 152:1733-40. 1999
  2. pmc The highly recombinogenic bz locus lies in an unusually gene-rich region of the maize genome
    H Fu
    The Waksman Institute, Rutgers University, Piscataway, NJ 08855, USA
    Proc Natl Acad Sci U S A 98:8903-8. 2001
  3. pmc Use of the transposon Ac as a gene-searching engine in the maize genome
    Matthew Cowperthwaite
    Waksman Institute, Rutgers University, Piscataway, New Jersey 08855, USA
    Plant Cell 14:713-26. 2002
  4. pmc Jittery, a Mutator distant relative with a paradoxical mobile behavior: excision without reinsertion
    Zhennan Xu
    Waksman Institute, Rutgers University, Piscataway, New Jersey 08855, USA
    Plant Cell 16:1105-14. 2004
  5. pmc Genome sequencing and comparative genomics of honey bee microsporidia, Nosema apis reveal novel insights into host-parasite interactions
    Yan Ping Chen
    USDA ARS Bee Research Laboratory, Beltsville, MD 20705, USA
    BMC Genomics 14:451. 2013
  6. doi request reprint Eavesdropping by bacteria: the role of SdiA in Escherichia coli and Salmonella enterica serovar Typhimurium quorum sensing
    James L Smith
    Microbial Food Safety Research Unit, Agricultural Research Service, United States Department of Agriculture, Eastern Regional Research Center, Wyndmoor, PA 19038, USA
    Foodborne Pathog Dis 8:169-78. 2011
  7. doi request reprint Escherichia coli serogroup O2 and O28ac O-antigen gene cluster sequences and detection of pathogenic E. coli O2 and O28ac by PCR
    Pina M Fratamico
    Eastern Regional Research Center, Agriculture Research Service, US Department of Agriculture, Wyndmoor, PA 19038, USA
    Can J Microbiol 56:308-16. 2010
  8. doi request reprint Differential gene expression of E. coli O157:H7 in ground beef extract compared to tryptic soy broth
    Pina M Fratamico
    U S Dept of Agriculture, Agricultural Research Service, Eastern Regional Research Center, Wyndmoor, PA 19038, USA
    J Food Sci 76:M79-87. 2011
  9. doi request reprint The complete DNA sequence and analysis of the virulence plasmid and of five additional plasmids carried by Shiga toxin-producing Escherichia coli O26:H11 strain H30
    Pina M Fratamico
    Eastern Regional Research Center, Agricultural Research Service, U S Department of Agriculture, 600 E Mermaid Lane, Wyndmoor, PA 19038, USA
    Int J Med Microbiol 301:192-203. 2011
  10. pmc Phylogenetic identification of bacterial MazF toxin protein motifs among probiotic strains and foodborne pathogens and potential implications of engineered probiotic intervention in food
    Xianghe Yan
    Eastern Regional Research Center, Agricultural Research Service, U, S, Department of Agriculture, 600 E, Mermaid Lane, Wyndmoor, PA, 19038, USA
    Cell Biosci 2:39. 2012

Collaborators

Detail Information

Publications12

  1. pmc Origination of Ds elements from Ac elements in maize: evidence for rare repair synthesis at the site of Ac excision
    X Yan
    The Waksman Institute, Rutgers University, Piscataway, New Jersey 08855, USA
    Genetics 152:1733-40. 1999
    ..These findings are explained most simply by a mechanism involving error-prone DNA replication as an occasional alternative to end-joining in the repair of Ac-generated double-strand breaks...
  2. pmc The highly recombinogenic bz locus lies in an unusually gene-rich region of the maize genome
    H Fu
    The Waksman Institute, Rutgers University, Piscataway, NJ 08855, USA
    Proc Natl Acad Sci U S A 98:8903-8. 2001
    ..The unusually high rate of intragenic recombination seen in bz may be related to the very high gene density of the region...
  3. pmc Use of the transposon Ac as a gene-searching engine in the maize genome
    Matthew Cowperthwaite
    Waksman Institute, Rutgers University, Piscataway, New Jersey 08855, USA
    Plant Cell 14:713-26. 2002
    ..The expression of most of these genes was confirmed by RNA gel blot analysis. We report here the isolation and characterization of the first 46 tac sites from the two insertion libraries...
  4. pmc Jittery, a Mutator distant relative with a paradoxical mobile behavior: excision without reinsertion
    Zhennan Xu
    Waksman Institute, Rutgers University, Piscataway, New Jersey 08855, USA
    Plant Cell 16:1105-14. 2004
    ..These unusual mobile element properties are discussed in light of the structure and gene organization of Jit and related elements...
  5. pmc Genome sequencing and comparative genomics of honey bee microsporidia, Nosema apis reveal novel insights into host-parasite interactions
    Yan Ping Chen
    USDA ARS Bee Research Laboratory, Beltsville, MD 20705, USA
    BMC Genomics 14:451. 2013
    ..ceranae. Genome sequencing of N. apis and comparative genome analysis with N. ceranae, a fully sequenced microsporidia species, reveal novel insights into host-parasite interactions underlying the parasite infections...
  6. doi request reprint Eavesdropping by bacteria: the role of SdiA in Escherichia coli and Salmonella enterica serovar Typhimurium quorum sensing
    James L Smith
    Microbial Food Safety Research Unit, Agricultural Research Service, United States Department of Agriculture, Eastern Regional Research Center, Wyndmoor, PA 19038, USA
    Foodborne Pathog Dis 8:169-78. 2011
    ..However, there is a lack of information concerning the role of SdiA in regulating growth and survival of E. coli and Salmonella in food environments, and therefore studies in this area are needed...
  7. doi request reprint Escherichia coli serogroup O2 and O28ac O-antigen gene cluster sequences and detection of pathogenic E. coli O2 and O28ac by PCR
    Pina M Fratamico
    Eastern Regional Research Center, Agriculture Research Service, US Department of Agriculture, Wyndmoor, PA 19038, USA
    Can J Microbiol 56:308-16. 2010
    ....
  8. doi request reprint Differential gene expression of E. coli O157:H7 in ground beef extract compared to tryptic soy broth
    Pina M Fratamico
    U S Dept of Agriculture, Agricultural Research Service, Eastern Regional Research Center, Wyndmoor, PA 19038, USA
    J Food Sci 76:M79-87. 2011
    ..coli O157:H7 differs in TSB compared to GBE. The information will be useful for identification of genes that can be employed as potential targets for interventions to control E. coli O157:H7...
  9. doi request reprint The complete DNA sequence and analysis of the virulence plasmid and of five additional plasmids carried by Shiga toxin-producing Escherichia coli O26:H11 strain H30
    Pina M Fratamico
    Eastern Regional Research Center, Agricultural Research Service, U S Department of Agriculture, 600 E Mermaid Lane, Wyndmoor, PA 19038, USA
    Int J Med Microbiol 301:192-203. 2011
    ..The data presented underscore the diversity among the STEC virulence plasmids and provide insights into the evolution of these plasmids in STEC strains that cause serious human illness...
  10. pmc Phylogenetic identification of bacterial MazF toxin protein motifs among probiotic strains and foodborne pathogens and potential implications of engineered probiotic intervention in food
    Xianghe Yan
    Eastern Regional Research Center, Agricultural Research Service, U, S, Department of Agriculture, 600 E, Mermaid Lane, Wyndmoor, PA, 19038, USA
    Cell Biosci 2:39. 2012
    ..abstract:..
  11. pmc Comprehensive approaches to molecular biomarker discovery for detection and identification of Cronobacter spp. (Enterobacter sakazakii) and Salmonella spp
    Xianghe Yan
    Eastern Regional Research Center, U S Department of Agriculture, Agricultural Research Service, 600 East Mermaid Lane, Wyndmoor, PA 19038, USA
    Appl Environ Microbiol 77:1833-43. 2011
    ....
  12. doi request reprint From ontology selection and semantic web to an integrated information system for food-borne diseases and food safety
    Xianghe Yan
    U S Department of Agriculture, Agricultural Research Service, Eastern Regional Research Center, Wyndmoor, PA 19038, USA
    Adv Exp Med Biol 696:741-50. 2011
    ....