Caird E Rexroad

Summary

Affiliation: Agricultural Research Service
Country: USA

Publications

  1. pmc A second generation genetic map for rainbow trout (Oncorhynchus mykiss)
    Caird E Rexroad
    USDA ARS National Center for Cool and Cold Water Aquaculture, Leetown, West Virginia, USA
    BMC Genet 9:74. 2008
  2. pmc Estimates of linkage disequilibrium and effective population size in rainbow trout
    Caird E Rexroad
    USDA ARS National Center for Cool and Cold Water Aquaculture, Leetown, West Virginia 25430, USA
    BMC Genet 10:83. 2009
  3. pmc A salmonid EST genomic study: genes, duplications, phylogeny and microarrays
    Ben F Koop
    Centre for Biomedical Research, University of Victoria, Victoria, British Columbia V8W3N5, Canada
    BMC Genomics 9:545. 2008
  4. doi request reprint Quantitative trait loci affecting response to crowding stress in an F(2) generation of rainbow trout produced through phenotypic selection
    Caird E Rexroad
    USDA ARS National Center for Cool and Cold Water Aquaculture, 11861 Leetown Road, Kearneysville, WV 25430, USA
    Mar Biotechnol (NY) 15:613-27. 2013
  5. pmc QTL affecting stress response to crowding in a rainbow trout broodstock population
    Caird E Rexroad
    USDA ARS National Center for Cool and Cold Water Aquaculture, Leetown, WV, USA
    BMC Genet 13:97. 2012
  6. pmc Generation of a reference transcriptome for evaluating rainbow trout responses to various stressors
    Cecilia C Sánchez
    Shepherd University, Institute of Environmental and Physical Sciences, Robert C Byrd Science and Technology Center, Shepherdstown, WV 25443, USA
    BMC Genomics 12:626. 2011
  7. pmc Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches
    Mohamed Salem
    Laboratory of Animal Biotechnology and Genomics, Division of Animal and Nutritional Sciences, West Virginia University, Morgantown, WV 26506, USA
    BMC Genomics 11:564. 2010
  8. pmc Cloning and characterization of microRNAs from rainbow trout (Oncorhynchus mykiss): their expression during early embryonic development
    Raghuveer K Ramachandra
    Laboratory of Animal Biotechnology and Genomics, Division of Animal and Nutritional Sciences, West Virginia University, Morgantown, WV 26506, USA
    BMC Dev Biol 8:41. 2008
  9. doi request reprint Identification, characterization and genetic mapping of TLR1 loci in rainbow trout (Oncorhynchus mykiss)
    Yniv Palti
    United States Department of Agriculture, Agriculture Research Service, National Center for Cool and Cold Water Aquaculture, 11861 Leetown Road, Kearneysville, WV 25430, USA
    Fish Shellfish Immunol 28:918-26. 2010
  10. pmc A first generation integrated map of the rainbow trout genome
    Yniv Palti
    National Center for Cool and Cold Water Aquaculture, ARS USDA, Kearneysville, WV 25430, USA
    BMC Genomics 12:180. 2011

Collaborators

Detail Information

Publications23

  1. pmc A second generation genetic map for rainbow trout (Oncorhynchus mykiss)
    Caird E Rexroad
    USDA ARS National Center for Cool and Cold Water Aquaculture, Leetown, West Virginia, USA
    BMC Genet 9:74. 2008
    ....
  2. pmc Estimates of linkage disequilibrium and effective population size in rainbow trout
    Caird E Rexroad
    USDA ARS National Center for Cool and Cold Water Aquaculture, Leetown, West Virginia 25430, USA
    BMC Genet 10:83. 2009
    ..To date the extent of LD has been characterized for humans and several agriculturally important livestock species but not for rainbow trout...
  3. pmc A salmonid EST genomic study: genes, duplications, phylogeny and microarrays
    Ben F Koop
    Centre for Biomedical Research, University of Victoria, Victoria, British Columbia V8W3N5, Canada
    BMC Genomics 9:545. 2008
    ..A comprehensive gene list and a comparison of genes in some of the different species provide valuable genomic information for one of the most widely studied groups of fish...
  4. doi request reprint Quantitative trait loci affecting response to crowding stress in an F(2) generation of rainbow trout produced through phenotypic selection
    Caird E Rexroad
    USDA ARS National Center for Cool and Cold Water Aquaculture, 11861 Leetown Road, Kearneysville, WV 25430, USA
    Mar Biotechnol (NY) 15:613-27. 2013
    ....
  5. pmc QTL affecting stress response to crowding in a rainbow trout broodstock population
    Caird E Rexroad
    USDA ARS National Center for Cool and Cold Water Aquaculture, Leetown, WV, USA
    BMC Genet 13:97. 2012
    ..Our goal was to estimate the number of major genes having large effects on this trait in our broodstock population through the identification of QTL...
  6. pmc Generation of a reference transcriptome for evaluating rainbow trout responses to various stressors
    Cecilia C Sánchez
    Shepherd University, Institute of Environmental and Physical Sciences, Robert C Byrd Science and Technology Center, Shepherdstown, WV 25443, USA
    BMC Genomics 12:626. 2011
    ....
  7. pmc Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches
    Mohamed Salem
    Laboratory of Animal Biotechnology and Genomics, Division of Animal and Nutritional Sciences, West Virginia University, Morgantown, WV 26506, USA
    BMC Genomics 11:564. 2010
    ..Although a large number (258,973) of EST sequences are publicly available, the nature of rainbow trout duplicated genome hinders assembly and complicates annotation...
  8. pmc Cloning and characterization of microRNAs from rainbow trout (Oncorhynchus mykiss): their expression during early embryonic development
    Raghuveer K Ramachandra
    Laboratory of Animal Biotechnology and Genomics, Division of Animal and Nutritional Sciences, West Virginia University, Morgantown, WV 26506, USA
    BMC Dev Biol 8:41. 2008
    ..These regulatory RNAs are potentially involved in the degradation of maternally inherited mRNAs during early embryogenesis...
  9. doi request reprint Identification, characterization and genetic mapping of TLR1 loci in rainbow trout (Oncorhynchus mykiss)
    Yniv Palti
    United States Department of Agriculture, Agriculture Research Service, National Center for Cool and Cold Water Aquaculture, 11861 Leetown Road, Kearneysville, WV 25430, USA
    Fish Shellfish Immunol 28:918-26. 2010
    ..Therefore, the identification of a TLR2 ortholog in rainbow trout and the development of assays to measure ligand binding and downstream signaling are critical for future elucidation of omTLR1 functions...
  10. pmc A first generation integrated map of the rainbow trout genome
    Yniv Palti
    National Center for Cool and Cold Water Aquaculture, ARS USDA, Kearneysville, WV 25430, USA
    BMC Genomics 12:180. 2011
    ....
  11. doi request reprint A second generation integrated map of the rainbow trout (Oncorhynchus mykiss) genome: analysis of conserved synteny with model fish genomes
    Yniv Palti
    National Center for Cool and Cold Water Aquaculture, ARS USDA, 11861 Leetown Road, Kearneysville, WV 25430, USA
    Mar Biotechnol (NY) 14:343-57. 2012
    ....
  12. pmc A first generation BAC-based physical map of the rainbow trout genome
    Yniv Palti
    National Center for Cool and Cold Water Aquaculture, ARS USDA, Kearneysville, WV 25430, USA
    BMC Genomics 10:462. 2009
    ..This resource will also facilitate efforts to obtain and assemble a whole-genome reference sequence for this species...
  13. ncbi request reprint Effects of short-term growth hormone treatment on liver and muscle transcriptomes in rainbow trout (Oncorhynchus mykiss)
    Scott A Gahr
    National Center for Cool and Cold Water Aquaculture, Agriculture Research Service, United States Department of Agriculture, Kearneysville, West Virginia 25430, USA
    Physiol Genomics 32:380-92. 2008
    ..Our results indicate that short-term GH treatment activates the immune system, shifts the metabolic sectors, and modulates growth-regulating genes...
  14. doi request reprint Identification, characterization and genetic mapping of TLR7, TLR8a1 and TLR8a2 genes in rainbow trout (Oncorhynchus mykiss)
    Yniv Palti
    United States Department of Agriculture, Agriculture Research Service, National Center for Cool and Cold Water Aquaculture, Kearneysville, WV 25430, USA
    Dev Comp Immunol 34:219-33. 2010
    ..The down-regulation of omTLR8a2 may imply that this gene has evolved to a new or altered function in rainbow trout, as often occurs when the two duplicated genes remain active...
  15. pmc Comparative mapping of expressed sequence tags containing microsatellites in rainbow trout (Oncorhynchus mykiss)
    Caird E Rexroad
    USDA ARS National Center for Cool and Cold Water Aquaculture, Kearneysville, West Virginia 25430, USA
    BMC Genomics 6:54. 2005
    ..The development of microsatellite markers from expressed sequence tags will serve to increase marker densities on current salmonid genetic maps and initiate in silico comparative maps with species whose genomes have been fully sequenced...
  16. doi request reprint A microsatellite linkage map of striped bass (Morone saxatilis) reveals conserved synteny with the three-spined stickleback (Gasterosteus aculeatus)
    Sixin Liu
    USDA ARS National Center of Cool and Cold Water Aquaculture, Kearneysville, WV 25430, USA
    Mar Biotechnol (NY) 14:237-44. 2012
    ....
  17. pmc Assessment of genetic correlation between bacterial cold water disease resistance and spleen index in a domesticated population of rainbow trout: identification of QTL on chromosome Omy19
    Gregory D Wiens
    National Center for Cool and Cold Water Aquaculture, Agricultural Research Service, United States Department of Agriculture, Kearneysville, West Virginia, United States of America
    PLoS ONE 8:e75749. 2013
    ..To our knowledge, this is the first estimation of spleen size heritability and evidence for genetic linkage with specific disease resistance in a teleost fish. ..
  18. ncbi request reprint A survey of expressed sequence tags from the rainbow trout (Oncorhynchus mykiss) pituitary
    Scott A Gahr
    United States Department of Agriculture, Agriculture Research Service, National Center for Cool and Cold Water Aquaculture, Kearneysville, West Virginia 25430, USA
    Anim Biotechnol 18:213-30. 2007
    ..Through in silico comparative mapping homologs were identified for 354 of the unigene sequences. These data provide the first functional information on many of the transcripts present in the rainbow trout pituitary...
  19. doi request reprint RNA-seq Analysis of Early Hepatic Response to Handling and Confinement Stress in Rainbow Trout
    Sixin Liu
    USDA ARS National Center for Cool and Cold Water Aquaculture, Kearneysville, West Virginia, United States of America
    PLoS ONE 9:e88492. 2014
    ..Pathways involved in response to handling and confinement stress were implicated by mapping the DETs to reference pathways in the KEGG database...
  20. ncbi request reprint Identification and expression profile of the ID gene family in the rainbow trout (Oncorhynchus mykiss)
    Scott A Gahr
    United States Department of Agriculture, Agriculture Research Service, National Center for Cool and Cold Water Aquaculture, 11861 Leetown Road, Kearneysville, WV 25430, USA
    Biochim Biophys Acta 1729:64-73. 2005
    ..The sequence analyses and gene expression patterns implicate gene and genome duplication in rainbow trout ID gene evolution and suggest an extensive role for the IDs in rainbow trout growth and development...
  21. pmc Genomic structure and expression of uncoupling protein 2 genes in rainbow trout (Oncorhynchus mykiss)
    Issa Coulibaly
    West Virginia University, Animal and Veterinary Sciences Division, PO Box 6108, Morgantown, WV 26506, USA
    BMC Genomics 7:203. 2006
    ..We report the first characterization of UCP2s in rainbow trout (Oncorhynchus mykiss)...
  22. pmc Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation library
    Cecilia Castaño Sánchez
    West Virginia University, Animal and Nutritional Sciences, Morgantown, WV, 26506, USA
    BMC Genomics 10:559. 2009
    ....
  23. ncbi request reprint Fasting and refeeding affect the expression of the Inhibitor of DNA Binding (ID) genes in rainbow trout (Oncorhynchus mykiss) muscle
    Scott A Gahr
    United States Department of Agriculture, Agriculture Research Service, National Center for Cool and Cold Water Aquaculture, Kearneysville, WV 25430, USA
    Comp Biochem Physiol B Biochem Mol Biol 144:472-7. 2006
    ..The reduction of ID expression during a fast and the subsequent return to fed levels with refeeding suggests the ID proteins participate in the regulation of muscle growth in the rainbow trout...