Yniv Palti

Summary

Affiliation: Agricultural Research Service
Country: USA

Publications

  1. ncbi request reprint Evolutionary history of the ABCB2 genomic region in teleosts
    Y Palti
    National Center for Cool and Cold Water Aquaculture USDA ARS, 11861 Leetown Road, Kearneysville, WV 25430, USA
    Dev Comp Immunol 31:483-98. 2007
  2. doi request reprint A second generation integrated map of the rainbow trout (Oncorhynchus mykiss) genome: analysis of conserved synteny with model fish genomes
    Yniv Palti
    National Center for Cool and Cold Water Aquaculture, ARS USDA, 11861 Leetown Road, Kearneysville, WV 25430, USA
    Mar Biotechnol (NY) 14:343-57. 2012
  3. pmc Analysis of BAC-end sequences in rainbow trout: content characterization and assessment of synteny between trout and other fish genomes
    Carine Genet
    INRA, UMR 1313 GABI, Génétique Animale et Biologie Intégrative, 78350 Jouy en Josas, France
    BMC Genomics 12:314. 2011
  4. ncbi request reprint Mapping of Toll-like receptor genes in rainbow trout
    Y Palti
    National Center for Cool and Cold Water Aquaculture, USDA ARS, Leetown, WV 25430, USA
    Anim Genet 37:597-8. 2006
  5. pmc A first generation BAC-based physical map of the rainbow trout genome
    Yniv Palti
    National Center for Cool and Cold Water Aquaculture, ARS USDA, Kearneysville, WV 25430, USA
    BMC Genomics 10:462. 2009
  6. doi request reprint Identification, characterization and genetic mapping of TLR7, TLR8a1 and TLR8a2 genes in rainbow trout (Oncorhynchus mykiss)
    Yniv Palti
    United States Department of Agriculture, Agriculture Research Service, National Center for Cool and Cold Water Aquaculture, Kearneysville, WV 25430, USA
    Dev Comp Immunol 34:219-33. 2010
  7. doi request reprint Identification, characterization and genetic mapping of TLR1 loci in rainbow trout (Oncorhynchus mykiss)
    Yniv Palti
    United States Department of Agriculture, Agriculture Research Service, National Center for Cool and Cold Water Aquaculture, 11861 Leetown Road, Kearneysville, WV 25430, USA
    Fish Shellfish Immunol 28:918-26. 2010
  8. doi request reprint Toll-like receptors in bony fish: from genomics to function
    Yniv Palti
    United States Department of Agriculture, Agriculture Research Service, National Center for Cool and Cold Water Aquaculture, Kearneysville, WV 25430, USA
    Dev Comp Immunol 35:1263-72. 2011
  9. pmc A first generation integrated map of the rainbow trout genome
    Yniv Palti
    National Center for Cool and Cold Water Aquaculture, ARS USDA, Kearneysville, WV 25430, USA
    BMC Genomics 12:180. 2011
  10. pmc QTL affecting stress response to crowding in a rainbow trout broodstock population
    Caird E Rexroad
    USDA ARS National Center for Cool and Cold Water Aquaculture, Leetown, WV, USA
    BMC Genet 13:97. 2012

Collaborators

Detail Information

Publications30

  1. ncbi request reprint Evolutionary history of the ABCB2 genomic region in teleosts
    Y Palti
    National Center for Cool and Cold Water Aquaculture USDA ARS, 11861 Leetown Road, Kearneysville, WV 25430, USA
    Dev Comp Immunol 31:483-98. 2007
    ..Our analysis indicates that this region was generated during the teleost-specific duplication event while also providing insight about potential MH paralogous regions in teleosts...
  2. doi request reprint A second generation integrated map of the rainbow trout (Oncorhynchus mykiss) genome: analysis of conserved synteny with model fish genomes
    Yniv Palti
    National Center for Cool and Cold Water Aquaculture, ARS USDA, 11861 Leetown Road, Kearneysville, WV 25430, USA
    Mar Biotechnol (NY) 14:343-57. 2012
    ....
  3. pmc Analysis of BAC-end sequences in rainbow trout: content characterization and assessment of synteny between trout and other fish genomes
    Carine Genet
    INRA, UMR 1313 GABI, Génétique Animale et Biologie Intégrative, 78350 Jouy en Josas, France
    BMC Genomics 12:314. 2011
    ..In order to enrich the genomic tools already available in this species and provide further insight on the complexity of its genome, we sequenced a large number of rainbow trout BAC-end sequences (BES) and characterized their contents...
  4. ncbi request reprint Mapping of Toll-like receptor genes in rainbow trout
    Y Palti
    National Center for Cool and Cold Water Aquaculture, USDA ARS, Leetown, WV 25430, USA
    Anim Genet 37:597-8. 2006
  5. pmc A first generation BAC-based physical map of the rainbow trout genome
    Yniv Palti
    National Center for Cool and Cold Water Aquaculture, ARS USDA, Kearneysville, WV 25430, USA
    BMC Genomics 10:462. 2009
    ..This resource will also facilitate efforts to obtain and assemble a whole-genome reference sequence for this species...
  6. doi request reprint Identification, characterization and genetic mapping of TLR7, TLR8a1 and TLR8a2 genes in rainbow trout (Oncorhynchus mykiss)
    Yniv Palti
    United States Department of Agriculture, Agriculture Research Service, National Center for Cool and Cold Water Aquaculture, Kearneysville, WV 25430, USA
    Dev Comp Immunol 34:219-33. 2010
    ..The down-regulation of omTLR8a2 may imply that this gene has evolved to a new or altered function in rainbow trout, as often occurs when the two duplicated genes remain active...
  7. doi request reprint Identification, characterization and genetic mapping of TLR1 loci in rainbow trout (Oncorhynchus mykiss)
    Yniv Palti
    United States Department of Agriculture, Agriculture Research Service, National Center for Cool and Cold Water Aquaculture, 11861 Leetown Road, Kearneysville, WV 25430, USA
    Fish Shellfish Immunol 28:918-26. 2010
    ..Therefore, the identification of a TLR2 ortholog in rainbow trout and the development of assays to measure ligand binding and downstream signaling are critical for future elucidation of omTLR1 functions...
  8. doi request reprint Toll-like receptors in bony fish: from genomics to function
    Yniv Palti
    United States Department of Agriculture, Agriculture Research Service, National Center for Cool and Cold Water Aquaculture, Kearneysville, WV 25430, USA
    Dev Comp Immunol 35:1263-72. 2011
    ....
  9. pmc A first generation integrated map of the rainbow trout genome
    Yniv Palti
    National Center for Cool and Cold Water Aquaculture, ARS USDA, Kearneysville, WV 25430, USA
    BMC Genomics 12:180. 2011
    ....
  10. pmc QTL affecting stress response to crowding in a rainbow trout broodstock population
    Caird E Rexroad
    USDA ARS National Center for Cool and Cold Water Aquaculture, Leetown, WV, USA
    BMC Genet 13:97. 2012
    ..Our goal was to estimate the number of major genes having large effects on this trait in our broodstock population through the identification of QTL...
  11. doi request reprint Quantitative trait loci affecting response to crowding stress in an F(2) generation of rainbow trout produced through phenotypic selection
    Caird E Rexroad
    USDA ARS National Center for Cool and Cold Water Aquaculture, 11861 Leetown Road, Kearneysville, WV 25430, USA
    Mar Biotechnol (NY) 15:613-27. 2013
    ....
  12. pmc A second generation genetic map for rainbow trout (Oncorhynchus mykiss)
    Caird E Rexroad
    USDA ARS National Center for Cool and Cold Water Aquaculture, Leetown, West Virginia, USA
    BMC Genet 9:74. 2008
    ....
  13. pmc Comparative mapping of expressed sequence tags containing microsatellites in rainbow trout (Oncorhynchus mykiss)
    Caird E Rexroad
    USDA ARS National Center for Cool and Cold Water Aquaculture, Kearneysville, West Virginia 25430, USA
    BMC Genomics 6:54. 2005
    ..The development of microsatellite markers from expressed sequence tags will serve to increase marker densities on current salmonid genetic maps and initiate in silico comparative maps with species whose genomes have been fully sequenced...
  14. pmc Assessment of genetic correlation between bacterial cold water disease resistance and spleen index in a domesticated population of rainbow trout: identification of QTL on chromosome Omy19
    Gregory D Wiens
    National Center for Cool and Cold Water Aquaculture, Agricultural Research Service, United States Department of Agriculture, Kearneysville, West Virginia, United States of America
    PLoS ONE 8:e75749. 2013
    ..To our knowledge, this is the first estimation of spleen size heritability and evidence for genetic linkage with specific disease resistance in a teleost fish. ..
  15. ncbi request reprint Genomic characterization of a novel pair of ID genes in the rainbow trout (Oncorhynchus mykiss)
    S A Gahr
    United Stated Department of Agriculture, Agriculture Research Service, National Center for Cool and Cold Water Aquaculture, Kearneysville, WV, USA
    Anim Genet 35:317-20. 2004
    ..Using reverse transcription polymerase chain reaction, we found both genes to be expressed in a variety of tissues in the adult rainbow trout...
  16. pmc Genomic structure and expression of uncoupling protein 2 genes in rainbow trout (Oncorhynchus mykiss)
    Issa Coulibaly
    West Virginia University, Animal and Veterinary Sciences Division, PO Box 6108, Morgantown, WV 26506, USA
    BMC Genomics 7:203. 2006
    ..We report the first characterization of UCP2s in rainbow trout (Oncorhynchus mykiss)...
  17. ncbi request reprint Characterization and mapping of 19 polymorphic microsatellite markers for rainbow trout (Oncorhynchus mykiss)
    Y Palti
    National Center for Cool and Cold Water Aquaculture, USDA ARS, 11876 Leetown Road, Kearneysville, WV 25430, USA
    Anim Genet 34:153-6. 2003
  18. ncbi request reprint Sequence analysis of a rainbow trout cDNA library and creation of a gene index
    C E Rexroad
    USDA ARS National Center for Cool and Cold Water Aquaculture, Kearneysville, West Virginia 25430, USA
    Cytogenet Genome Res 102:347-54. 2003
    ..The production of this sequence data and creation of a rainbow trout Gene Index eliminating redundancy and providing annotation for these sequences will facilitate research in this species...
  19. doi request reprint Evidence of major genes affecting resistance to bacterial cold water disease in rainbow trout using Bayesian methods of segregation analysis
    R L Vallejo
    National Center for Cool and Cold Water Aquaculture, USDA ARS, 11861 Leetown Rd, Kearneysville, WV 25430, USA
    J Anim Sci 88:3814-32. 2010
    ..These findings provide the basis for designing informative crosses for QTL mapping and carrying out genome scans for QTL affecting BCWD resistance in rainbow trout...
  20. ncbi request reprint Characterization of a new BAC library for rainbow trout: evidence for multi-locus duplication
    Y Palti
    USDA ARS National Center for Cool and Cold Water Aquaculture, Kearneysville, WV 25430, USA
    Anim Genet 35:130-3. 2004
    ..Two-thirds of the loci screened were predicted to be duplicated as the positive BACs for those genes were assembled into two or three different contigs, which suggests that most of the rainbow trout genome is duplicated...
  21. ncbi request reprint Characterization of Toll-like receptor 3 gene in rainbow trout (Oncorhynchus mykiss)
    M F Rodriguez
    Agriculture Research Service, National Center for Cool and Cold Water Aquaculture, United States Department of Agriculture, Kearneysville, WV 25430, USA
    Immunogenetics 57:510-9. 2005
    ..The sequence conservation of trout TLR3 and mRNA regulation after poly (I:C) or RNA virus exposures strongly suggest a role for trout TLR3 in antiviral immunity...
  22. pmc A conserved haplotype controls parallel adaptation in geographically distant salmonid populations
    Michael R Miller
    Institute of Molecular Biology and Howard Hughes Medical Institute, University of Oregon, Eugene, OR 97403, USA
    Mol Ecol 21:237-49. 2012
    ..The repeated use of adaptive genetic variation across distant geographical areas could be a general theme in salmonids and have important implications for conservation and restoration...
  23. doi request reprint Suggestive association of major histocompatibility IB genetic markers with resistance to bacterial cold water disease in rainbow trout (Oncorhynchus mykiss)
    Nathan A Johnson
    National Center for Cool and Cold Water Aquaculture USDA ARS, 11861 Leetown Road, Kearneysville, WV 25430, USA
    Mar Biotechnol (NY) 10:429-37. 2008
    ..The impact of selective breeding for disease resistance on MH sequence variation is discussed in the context of aquaculture production...
  24. ncbi request reprint A polymerase chain reaction screening method for rapid detection of microsatellites in bacterial artificial chromosomes
    M F Rodriguez
    National Center for Cool and Cold Water Aquaculture, USDA ARS, 11861 Leetown Rd, Kearneysville, WV 25430, USA
    Mar Biotechnol (NY) 8:346-50. 2006
    ..9% and 71.4%), but still a sufficient number of subclones were identified to enable design and optimization of microsatellite markers...
  25. doi request reprint Molecular cloning, characterization and expression analysis of TLR9, MyD88 and TRAF6 genes in common carp (Cyprinus carpio)
    Pawapol Kongchum
    Department of Fisheries and Wildlife Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA
    Fish Shellfish Immunol 30:361-71. 2011
    ..The genomic information we describe in this paper provides evidence of sequence and structural conservation of immune response genes in common carp...
  26. doi request reprint Response to selection for bacterial cold water disease resistance in rainbow trout
    T D Leeds
    USDA, ARS, National Center for Cool and Cold Water Aquaculture, Kearneysville, WV 25430, USA
    J Anim Sci 88:1936-46. 2010
    ..Accuracy estimates were not different (P = 0.81) between the models. This study demonstrates that selective breeding can be effective for improving resistance to experimental BCWD challenge in rainbow trout...
  27. doi request reprint Rainbow trout resistance to bacterial cold-water disease is moderately heritable and is not adversely correlated with growth
    J T Silverstein
    US Department of Agriculture, Agricultural Research Service, National Center for Cool and Cold Water Aquaculture, Kearneysville, WV 25430, USA
    J Anim Sci 87:860-7. 2009
    ..These results suggest that genetic improvement can be made simultaneously for growth and bacterial cold-water disease resistance in rainbow trout by using selective breeding...
  28. ncbi request reprint Mapping of genes in a region associated with upper temperature tolerance in rainbow trout
    I Coulibaly
    Animal and Veterinary Sciences Division, West Virginia University, PO Box 6108, Morgantown, WV 26506, USA
    Anim Genet 37:598-9. 2006
  29. ncbi request reprint Sequence of the canine major histocompatibility complex region containing non-classical class I genes
    J L Wagner
    Blood and Marrow Transplant Program, Department of Medicine, Thomas Jefferson University, Philadelphia, PA 19107, USA
    Tissue Antigens 65:549-55. 2005
    ..The remaining 76% comprised of a number of non-coding and repetitive DNA elements including long interspersed nuclear element (LINE) fragments, short interspersed nuclear elements (SINE), and microsatellites...
  30. ncbi request reprint Association between loci with deleterious alleles and distorted sex ratios in an inbred line of tilapia (Oreochromis aureus)
    A Shirak
    Laboratory of Fish Immunology and Genetics, Faculty of Life Sciences, Bar Ilan University, Ramat Gan 52900, Israel
    J Hered 93:270-6. 2002
    ..Our data suggest that UNH216 and UNH231 are linked to sex ratio distortion genes and that UNH159 may be linked to a modifier of these genes...