Yniv Palti

Summary

Affiliation: Agricultural Research Service
Country: USA

Publications

  1. ncbi Evolutionary history of the ABCB2 genomic region in teleosts
    Y Palti
    National Center for Cool and Cold Water Aquaculture USDA ARS, 11861 Leetown Road, Kearneysville, WV 25430, USA
    Dev Comp Immunol 31:483-98. 2007
  2. ncbi A second generation integrated map of the rainbow trout (Oncorhynchus mykiss) genome: analysis of conserved synteny with model fish genomes
    Yniv Palti
    National Center for Cool and Cold Water Aquaculture, ARS USDA, 11861 Leetown Road, Kearneysville, WV 25430, USA
    Mar Biotechnol (NY) 14:343-57. 2012
  3. ncbi Analysis of BAC-end sequences in rainbow trout: content characterization and assessment of synteny between trout and other fish genomes
    Carine Genet
    INRA, UMR 1313 GABI, Génétique Animale et Biologie Intégrative, 78350 Jouy en Josas, France
    BMC Genomics 12:314. 2011
  4. ncbi Mapping of Toll-like receptor genes in rainbow trout
    Y Palti
    National Center for Cool and Cold Water Aquaculture, USDA-ARS, Leetown, WV 25430, USA
    Anim Genet 37:597-8. 2006
  5. ncbi A first generation BAC-based physical map of the rainbow trout genome
    Yniv Palti
    National Center for Cool and Cold Water Aquaculture, ARS USDA, Kearneysville, WV 25430, USA
    BMC Genomics 10:462. 2009
  6. ncbi Identification, characterization and genetic mapping of TLR7, TLR8a1 and TLR8a2 genes in rainbow trout (Oncorhynchus mykiss)
    Yniv Palti
    United States Department of Agriculture, Agriculture Research Service, National Center for Cool and Cold Water Aquaculture, Kearneysville, WV 25430, USA
    Dev Comp Immunol 34:219-33. 2010
  7. ncbi Identification, characterization and genetic mapping of TLR1 loci in rainbow trout (Oncorhynchus mykiss)
    Yniv Palti
    United States Department of Agriculture, Agriculture Research Service, National Center for Cool and Cold Water Aquaculture, 11861 Leetown Road, Kearneysville, WV 25430, USA
    Fish Shellfish Immunol 28:918-26. 2010
  8. ncbi Toll-like receptors in bony fish: from genomics to function
    Yniv Palti
    United States Department of Agriculture, Agriculture Research Service, National Center for Cool and Cold Water Aquaculture, Kearneysville, WV 25430, USA
    Dev Comp Immunol 35:1263-72. 2011
  9. ncbi A first generation integrated map of the rainbow trout genome
    Yniv Palti
    National Center for Cool and Cold Water Aquaculture, ARS USDA, Kearneysville, WV 25430, USA
    BMC Genomics 12:180. 2011
  10. ncbi QTL affecting stress response to crowding in a rainbow trout broodstock population
    Caird E Rexroad
    USDA ARS National Center for Cool and Cold Water Aquaculture, Leetown, WV, USA
    BMC Genet 13:97. 2012

Collaborators

Detail Information

Publications28

  1. ncbi Evolutionary history of the ABCB2 genomic region in teleosts
    Y Palti
    National Center for Cool and Cold Water Aquaculture USDA ARS, 11861 Leetown Road, Kearneysville, WV 25430, USA
    Dev Comp Immunol 31:483-98. 2007
    ..Our analysis indicates that this region was generated during the teleost-specific duplication event while also providing insight about potential MH paralogous regions in teleosts...
  2. ncbi A second generation integrated map of the rainbow trout (Oncorhynchus mykiss) genome: analysis of conserved synteny with model fish genomes
    Yniv Palti
    National Center for Cool and Cold Water Aquaculture, ARS USDA, 11861 Leetown Road, Kearneysville, WV 25430, USA
    Mar Biotechnol (NY) 14:343-57. 2012
    ....
  3. ncbi Analysis of BAC-end sequences in rainbow trout: content characterization and assessment of synteny between trout and other fish genomes
    Carine Genet
    INRA, UMR 1313 GABI, Génétique Animale et Biologie Intégrative, 78350 Jouy en Josas, France
    BMC Genomics 12:314. 2011
    ..In order to enrich the genomic tools already available in this species and provide further insight on the complexity of its genome, we sequenced a large number of rainbow trout BAC-end sequences (BES) and characterized their contents...
  4. ncbi Mapping of Toll-like receptor genes in rainbow trout
    Y Palti
    National Center for Cool and Cold Water Aquaculture, USDA-ARS, Leetown, WV 25430, USA
    Anim Genet 37:597-8. 2006
  5. ncbi A first generation BAC-based physical map of the rainbow trout genome
    Yniv Palti
    National Center for Cool and Cold Water Aquaculture, ARS USDA, Kearneysville, WV 25430, USA
    BMC Genomics 10:462. 2009
    ..This resource will also facilitate efforts to obtain and assemble a whole-genome reference sequence for this species...
  6. ncbi Identification, characterization and genetic mapping of TLR7, TLR8a1 and TLR8a2 genes in rainbow trout (Oncorhynchus mykiss)
    Yniv Palti
    United States Department of Agriculture, Agriculture Research Service, National Center for Cool and Cold Water Aquaculture, Kearneysville, WV 25430, USA
    Dev Comp Immunol 34:219-33. 2010
    ..The down-regulation of omTLR8a2 may imply that this gene has evolved to a new or altered function in rainbow trout, as often occurs when the two duplicated genes remain active...
  7. ncbi Identification, characterization and genetic mapping of TLR1 loci in rainbow trout (Oncorhynchus mykiss)
    Yniv Palti
    United States Department of Agriculture, Agriculture Research Service, National Center for Cool and Cold Water Aquaculture, 11861 Leetown Road, Kearneysville, WV 25430, USA
    Fish Shellfish Immunol 28:918-26. 2010
    ..Therefore, the identification of a TLR2 ortholog in rainbow trout and the development of assays to measure ligand binding and downstream signaling are critical for future elucidation of omTLR1 functions...
  8. ncbi Toll-like receptors in bony fish: from genomics to function
    Yniv Palti
    United States Department of Agriculture, Agriculture Research Service, National Center for Cool and Cold Water Aquaculture, Kearneysville, WV 25430, USA
    Dev Comp Immunol 35:1263-72. 2011
    ....
  9. ncbi A first generation integrated map of the rainbow trout genome
    Yniv Palti
    National Center for Cool and Cold Water Aquaculture, ARS USDA, Kearneysville, WV 25430, USA
    BMC Genomics 12:180. 2011
    ....
  10. ncbi QTL affecting stress response to crowding in a rainbow trout broodstock population
    Caird E Rexroad
    USDA ARS National Center for Cool and Cold Water Aquaculture, Leetown, WV, USA
    BMC Genet 13:97. 2012
    ..Our goal was to estimate the number of major genes having large effects on this trait in our broodstock population through the identification of QTL...
  11. ncbi A second generation genetic map for rainbow trout (Oncorhynchus mykiss)
    Caird E Rexroad
    USDA ARS National Center for Cool and Cold Water Aquaculture, Leetown, West Virginia, USA
    BMC Genet 9:74. 2008
    ....
  12. ncbi Comparative mapping of expressed sequence tags containing microsatellites in rainbow trout (Oncorhynchus mykiss)
    Caird E Rexroad
    USDA ARS National Center for Cool and Cold Water Aquaculture, Kearneysville, West Virginia 25430, USA
    BMC Genomics 6:54. 2005
    ..The development of microsatellite markers from expressed sequence tags will serve to increase marker densities on current salmonid genetic maps and initiate in silico comparative maps with species whose genomes have been fully sequenced...
  13. ncbi Genomic characterization of a novel pair of ID genes in the rainbow trout (Oncorhynchus mykiss)
    S A Gahr
    United Stated Department of Agriculture, Agriculture Research Service, National Center for Cool and Cold Water Aquaculture, Kearneysville, WV, USA
    Anim Genet 35:317-20. 2004
    ..Using reverse transcription polymerase chain reaction, we found both genes to be expressed in a variety of tissues in the adult rainbow trout...
  14. ncbi Genomic structure and expression of uncoupling protein 2 genes in rainbow trout (Oncorhynchus mykiss)
    Issa Coulibaly
    West Virginia University, Animal and Veterinary Sciences Division, PO Box 6108, Morgantown, WV 26506, USA
    BMC Genomics 7:203. 2006
    ..We report the first characterization of UCP2s in rainbow trout (Oncorhynchus mykiss)...
  15. ncbi Characterization of Toll-like receptor 3 gene in rainbow trout (Oncorhynchus mykiss)
    M F Rodriguez
    Agriculture Research Service, National Center for Cool and Cold Water Aquaculture, United States Department of Agriculture, Kearneysville, WV 25430, USA
    Immunogenetics 57:510-9. 2005
    ..The sequence conservation of trout TLR3 and mRNA regulation after poly (I:C) or RNA virus exposures strongly suggest a role for trout TLR3 in antiviral immunity...
  16. ncbi Characterization and mapping of 19 polymorphic microsatellite markers for rainbow trout (Oncorhynchus mykiss)
    Y Palti
    National Center for Cool and Cold Water Aquaculture, USDA-ARS, 11876 Leetown Road, Kearneysville, WV 25430, USA
    Anim Genet 34:153-6. 2003
  17. ncbi Characterization of a new BAC library for rainbow trout: evidence for multi-locus duplication
    Y Palti
    USDA ARS National Center for Cool and Cold Water Aquaculture, Kearneysville, WV 25430, USA
    Anim Genet 35:130-3. 2004
    ..Two-thirds of the loci screened were predicted to be duplicated as the positive BACs for those genes were assembled into two or three different contigs, which suggests that most of the rainbow trout genome is duplicated...
  18. ncbi Evidence of major genes affecting resistance to bacterial cold water disease in rainbow trout using Bayesian methods of segregation analysis
    R L Vallejo
    National Center for Cool and Cold Water Aquaculture, USDA ARS, 11861 Leetown Rd, Kearneysville, WV 25430, USA
    J Anim Sci 88:3814-32. 2010
    ..These findings provide the basis for designing informative crosses for QTL mapping and carrying out genome scans for QTL affecting BCWD resistance in rainbow trout...
  19. ncbi Sequence analysis of a rainbow trout cDNA library and creation of a gene index
    C E Rexroad
    USDA ARS National Center for Cool and Cold Water Aquaculture, Kearneysville, West Virginia 25430, USA
    Cytogenet Genome Res 102:347-54. 2003
    ..The production of this sequence data and creation of a rainbow trout Gene Index eliminating redundancy and providing annotation for these sequences will facilitate research in this species...
  20. ncbi A conserved haplotype controls parallel adaptation in geographically distant salmonid populations
    Michael R Miller
    Institute of Molecular Biology and Howard Hughes Medical Institute, University of Oregon, Eugene, OR 97403, USA
    Mol Ecol 21:237-49. 2012
    ..The repeated use of adaptive genetic variation across distant geographical areas could be a general theme in salmonids and have important implications for conservation and restoration...
  21. ncbi Suggestive association of major histocompatibility IB genetic markers with resistance to bacterial cold water disease in rainbow trout (Oncorhynchus mykiss)
    Nathan A Johnson
    National Center for Cool and Cold Water Aquaculture USDA ARS, 11861 Leetown Road, Kearneysville, WV 25430, USA
    Mar Biotechnol (NY) 10:429-37. 2008
    ..The impact of selective breeding for disease resistance on MH sequence variation is discussed in the context of aquaculture production...
  22. ncbi A polymerase chain reaction screening method for rapid detection of microsatellites in bacterial artificial chromosomes
    M F Rodriguez
    National Center for Cool and Cold Water Aquaculture, USDA-ARS, 11861 Leetown Rd, Kearneysville, WV 25430, USA
    Mar Biotechnol (NY) 8:346-50. 2006
    ..9% and 71.4%), but still a sufficient number of subclones were identified to enable design and optimization of microsatellite markers...
  23. ncbi Molecular cloning, characterization and expression analysis of TLR9, MyD88 and TRAF6 genes in common carp (Cyprinus carpio)
    Pawapol Kongchum
    Department of Fisheries and Wildlife Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA
    Fish Shellfish Immunol 30:361-71. 2011
    ..The genomic information we describe in this paper provides evidence of sequence and structural conservation of immune response genes in common carp...
  24. ncbi Response to selection for bacterial cold water disease resistance in rainbow trout
    T D Leeds
    USDA, ARS, National Center for Cool and Cold Water Aquaculture, Kearneysville, WV 25430, USA
    J Anim Sci 88:1936-46. 2010
    ..Accuracy estimates were not different (P = 0.81) between the models. This study demonstrates that selective breeding can be effective for improving resistance to experimental BCWD challenge in rainbow trout...
  25. ncbi Rainbow trout resistance to bacterial cold-water disease is moderately heritable and is not adversely correlated with growth
    J T Silverstein
    US Department of Agriculture, Agricultural Research Service, National Center for Cool and Cold Water Aquaculture, Kearneysville, WV 25430, USA
    J Anim Sci 87:860-7. 2009
    ..These results suggest that genetic improvement can be made simultaneously for growth and bacterial cold-water disease resistance in rainbow trout by using selective breeding...
  26. ncbi Sequence of the canine major histocompatibility complex region containing non-classical class I genes
    J L Wagner
    Blood and Marrow Transplant Program, Department of Medicine, Thomas Jefferson University, Philadelphia, PA 19107, USA
    Tissue Antigens 65:549-55. 2005
    ..The remaining 76% comprised of a number of non-coding and repetitive DNA elements including long interspersed nuclear element (LINE) fragments, short interspersed nuclear elements (SINE), and microsatellites...
  27. ncbi Mapping of genes in a region associated with upper temperature tolerance in rainbow trout
    I Coulibaly
    Animal and Veterinary Sciences Division, West Virginia University, PO Box 6108, Morgantown, WV 26506, USA
    Anim Genet 37:598-9. 2006
  28. ncbi Association between loci with deleterious alleles and distorted sex ratios in an inbred line of tilapia (Oreochromis aureus)
    A Shirak
    Laboratory of Fish Immunology and Genetics, Faculty of Life Sciences, Bar Ilan University, Ramat Gan 52900, Israel
    J Hered 93:270-6. 2002
    ..Our data suggest that UNH216 and UNH231 are linked to sex ratio distortion genes and that UNH159 may be linked to a modifier of these genes...