Hong Lin

Summary

Affiliation: Agricultural Research Service
Country: USA

Publications

  1. pmc Multilocus simple sequence repeat markers for differentiating strains and evaluating genetic diversity of Xylella fastidiosa
    Hong Lin
    Crop Diseases, Pests and Genetics, U S Department of Agriculture ARS, 9611 S Riverbend Avenue, Parlier, CA 93648, USA
    Appl Environ Microbiol 71:4888-92. 2005
  2. doi request reprint A new diagnostic system for ultra-sensitive and specific detection and quantification of Candidatus Liberibacter asiaticus, the bacterium associated with citrus Huanglongbing
    Hong Lin
    Crop Diseases, Pests and Genetics Research Unit, San Joaquin Valley Agricultural Science Center, USDA ARS PWA, Parlier, CA 93648, USA
    J Microbiol Methods 81:17-25. 2010
  3. pmc The complete genome sequence of 'Candidatus Liberibacter solanacearum', the bacterium associated with potato zebra chip disease
    Hong Lin
    United States Department of Agriculture Agricultural Research Service, CDPG, San Joaquin Valley Agricultural Sciences Center, Parlier, California, United States of America
    PLoS ONE 6:e19135. 2011
  4. pmc Analysis of the genome-wide variations among multiple strains of the plant pathogenic bacterium Xylella fastidiosa
    Harshavardhan Doddapaneni
    University of California Davis, Department of Viticulture and Enology, Davis, CA 95616, USA
    BMC Genomics 7:225. 2006
  5. ncbi request reprint Acquisition of uncharacterized sequences from Candidatus liberibacter, an unculturable bacterium, using an improved genomic walking method
    Hong Lin
    USDA ARS, San Joaquin Valley Agricultural Science Center, Parlier, CA 93648, USA
    Mol Cell Probes 22:30-7. 2008
  6. pmc Comparative analysis of ESTs involved in grape responses to Xylella fastidiosa infection
    Hong Lin
    USDA ARS, 9611 S, Riverbend Avenue, Parlier, California 93648, USA
    BMC Plant Biol 7:8. 2007
  7. pmc Transcriptional regulation of the grape cytochrome P450 monooxygenase gene CYP736B expression in response to Xylella fastidiosa infection
    Davis W Cheng
    San Joaquin Valley Agricultural Science Center, USDA ARS 9611 South Riverbend Avenue, Parlier, CA 93648, USA
    BMC Plant Biol 10:135. 2010
  8. pmc VitisExpDB: a database resource for grape functional genomics
    Harshavardhan Doddapaneni
    USDA ARS, San Joaquin Valley Agricultural Science Center, 9611 So Riverbend Ave, Parlier, CA 93648, USA
    BMC Plant Biol 8:23. 2008
  9. pmc Multilocus microsatellite analysis of 'Candidatus Liberibacter asiaticus' associated with citrus Huanglongbing worldwide
    Md Sajedul Islam
    USDA ARS San Joaquin Valley Agricultural Research Science Center, Parlier, CA 93648, USA
    BMC Microbiol 12:39. 2012
  10. pmc Comparative phylogenomics and multi-gene cluster analyses of the Citrus Huanglongbing (HLB)-associated bacterium Candidatus Liberibacter
    Harshavardhan Doddapaneni
    USDA ARS, San Joaquin Valley Agricultural Science Center, 9611 So, Riverbend Avenue, Parlier, CA 93648, USA
    BMC Res Notes 1:72. 2008

Collaborators

Detail Information

Publications25

  1. pmc Multilocus simple sequence repeat markers for differentiating strains and evaluating genetic diversity of Xylella fastidiosa
    Hong Lin
    Crop Diseases, Pests and Genetics, U S Department of Agriculture ARS, 9611 S Riverbend Avenue, Parlier, CA 93648, USA
    Appl Environ Microbiol 71:4888-92. 2005
    ..fastidiosa strains collected from grape, almond, citrus, and oleander. They are well suited for differentiating strains and studying X. fastidiosa epidemiology and population genetics...
  2. doi request reprint A new diagnostic system for ultra-sensitive and specific detection and quantification of Candidatus Liberibacter asiaticus, the bacterium associated with citrus Huanglongbing
    Hong Lin
    Crop Diseases, Pests and Genetics Research Unit, San Joaquin Valley Agricultural Science Center, USDA ARS PWA, Parlier, CA 93648, USA
    J Microbiol Methods 81:17-25. 2010
    ..The technique described here is generic and can be applied to the detection of other plant pathogenic bacteria...
  3. pmc The complete genome sequence of 'Candidatus Liberibacter solanacearum', the bacterium associated with potato zebra chip disease
    Hong Lin
    United States Department of Agriculture Agricultural Research Service, CDPG, San Joaquin Valley Agricultural Sciences Center, Parlier, California, United States of America
    PLoS ONE 6:e19135. 2011
    ..L. solanacearum' probably has reduced capacity for nucleic acid modification, increased amino acid and vitamin biosynthesis functionalities, and gained a high-affinity iron transport system characteristic of several pathogenic microbes...
  4. pmc Analysis of the genome-wide variations among multiple strains of the plant pathogenic bacterium Xylella fastidiosa
    Harshavardhan Doddapaneni
    University of California Davis, Department of Viticulture and Enology, Davis, CA 95616, USA
    BMC Genomics 7:225. 2006
    ..With the availability of genome sequence information for four strains, it is now possible to perform genome-wide analyses to identify and categorize such DNA variations and to understand their influence on strain functional divergence...
  5. ncbi request reprint Acquisition of uncharacterized sequences from Candidatus liberibacter, an unculturable bacterium, using an improved genomic walking method
    Hong Lin
    USDA ARS, San Joaquin Valley Agricultural Science Center, Parlier, CA 93648, USA
    Mol Cell Probes 22:30-7. 2008
    ....
  6. pmc Comparative analysis of ESTs involved in grape responses to Xylella fastidiosa infection
    Hong Lin
    USDA ARS, 9611 S, Riverbend Avenue, Parlier, California 93648, USA
    BMC Plant Biol 7:8. 2007
    ..The current molecular breeding efforts have identified genetic basis of PD resistance in grapes. However, the transcriptome level characterization of the host response to this pathogen is lacking...
  7. pmc Transcriptional regulation of the grape cytochrome P450 monooxygenase gene CYP736B expression in response to Xylella fastidiosa infection
    Davis W Cheng
    San Joaquin Valley Agricultural Science Center, USDA ARS 9611 South Riverbend Avenue, Parlier, CA 93648, USA
    BMC Plant Biol 10:135. 2010
    ....
  8. pmc VitisExpDB: a database resource for grape functional genomics
    Harshavardhan Doddapaneni
    USDA ARS, San Joaquin Valley Agricultural Science Center, 9611 So Riverbend Ave, Parlier, CA 93648, USA
    BMC Plant Biol 8:23. 2008
    ..Our goal is to develop a comprehensive web data source for Vitaceae...
  9. pmc Multilocus microsatellite analysis of 'Candidatus Liberibacter asiaticus' associated with citrus Huanglongbing worldwide
    Md Sajedul Islam
    USDA ARS San Joaquin Valley Agricultural Research Science Center, Parlier, CA 93648, USA
    BMC Microbiol 12:39. 2012
    ..L. asiaticus' from a worldwide collection. Two hundred eighty seven isolates from USA (Florida), Brazil, China, India, Cambodia, Vietnam, Taiwan, Thailand, and Japan were analyzed...
  10. pmc Comparative phylogenomics and multi-gene cluster analyses of the Citrus Huanglongbing (HLB)-associated bacterium Candidatus Liberibacter
    Harshavardhan Doddapaneni
    USDA ARS, San Joaquin Valley Agricultural Science Center, 9611 So, Riverbend Avenue, Parlier, CA 93648, USA
    BMC Res Notes 1:72. 2008
    ..Expanding the genetic knowledge of this organism may provide better understanding of the pathogen and possibly develop effective strategies for control and management of HLB...
  11. doi request reprint Complete genome sequence of citrus huanglongbing bacterium, 'Candidatus Liberibacter asiaticus' obtained through metagenomics
    Yongping Duan
    USDA ARS USHRL, Fort Pierce, FL 34945, U S A
    Mol Plant Microbe Interact 22:1011-20. 2009
    ..L. asiaticus' as an early-branching and highly divergent member of the family Rhizobiaceae. This is the first genome sequence of an uncultured alpha-proteobacteria that is both an intracellular plant pathogen and insect symbiont...
  12. doi request reprint Aspects of pathogen genomics, diversity, epidemiology, vector dynamics, and disease management for a newly emerged disease of potato: zebra chip
    Hong Lin
    United States Department of Agriculture Agricultural Research Service Crop Diseases, Pests and Genetics Research Unit 9611, S Riverbend Avenue, Parlier, CA 93648, USA
    Phytopathology 103:524-37. 2013
    ....
  13. doi request reprint Reproductive mode and fine-scale population genetic structure of grape phylloxera (Daktulosphaira vitifoliae) in a viticultural area in California
    Md Sajedul Islam
    USDA, Agricultural Resarch Service, USDA ARS, San Joaquin Valley Agricultural Sciences Center, 9611 South Riverbend Avenue, Parlier, CA 93648 9757, USA
    BMC Genet 14:123. 2013
    ..We examined reproductive mode and genetic structure of phylloxera by analyzing microsatellite makers across the samples from four vineyard-sites in California...
  14. ncbi request reprint nWayComp: a genome-wide sequence comparison tool for multiple strains/species of phylogenetically related microorganisms
    Jiqiang Yao
    Citrus Research Board, 323 W Oak, P O Box 230, Visalia, CA 93279, USA
    In Silico Biol 7:195-200. 2007
    ..The nWayComp package provides users with a quick and convenient tool to compare genomic sequences among multiple organisms at the whole-genome level...
  15. pmc PrimerSNP: a web tool for whole-genome selection of allele-specific and common primers of phylogenetically-related bacterial genomic sequences
    Jiqiang Yao
    Citrus Research Board, 323 W Oak Street, Visalia, CA 93291, USA
    BMC Microbiol 8:185. 2008
    ..PrimerSNP attempts to identify reliable strain-specific markers, on which specific primers are designed for pathogen detection purpose...
  16. ncbi request reprint Behavioral responses of Homalodisca vitripennis (Hemiptera: Auchenorrhyncha: Cicadellidae) on four Vitis genotypes
    Felix B Fritschi
    Division of Plant Sciences, University of Missouri Columbia, Columbia, MO 65211, USA
    Environ Entomol 36:926-37. 2007
    ..Grape genotype affected the behavior of adult H. vitripennis under controlled conditions, which may influence Pierce's disease epidemiology under field conditions...
  17. ncbi request reprint A PKC epsilon-ENH-channel complex specifically modulates N-type Ca2+ channels
    Yuka Maeno-Hikichi
    Department of Pharmacology, University of Pennsylvania School of Medicine, 3620 Hamilton Walk, Philadelphia, Pennsylvania 19104, USA
    Nat Neurosci 6:468-75. 2003
    ....
  18. ncbi request reprint Tomoregulin ectodomain shedding by proinflammatory cytokines
    Hong Lin
    Third Department of Internal Medicine, Nippon Medical School, Tokyo, Japan
    Life Sci 73:1617-27. 2003
    ....
  19. ncbi request reprint HoxB2 binds mutant SOD1 and is altered in transgenic model of ALS
    Jinbin Zhai
    Division of Neuropathology, Department of Pathology and Laboratory Medicine, University of Pennsylvania School of Medicine, Philadelphia, PA 19104, USA
    Hum Mol Genet 14:2629-40. 2005
    ..Taken together, our findings demonstrate that interaction of HoxB2 with mutant SOD1 occurs in motor neurons of G93A mutant SOD1 transgenic mice and suggest that this interaction may modulate the neurotoxicity of mutant SOD1...
  20. ncbi request reprint MMP-2 mediates ethanol-induced invasion of mammary epithelial cells over-expressing ErbB2
    Zunji Ke
    Institute for Nutritional Sciences, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, People s Republic of China
    Int J Cancer 119:8-16. 2006
    ..Thus, ethanol-stimulated invasion of cells over-expressing ErbB2 was mediated, at least partially, by MMP-2 activation...
  21. ncbi request reprint Expression and functional analysis of the rice plasma-membrane intrinsic protein gene family
    Lei Guo
    Peking Yale Joint Research Center for Plant Molecular Genetics and AgroBiotechnology, National Laboratory for Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University, Beijing 100871, China
    Cell Res 16:277-86. 2006
    ..Taken together, these data suggest a distinct role of each OsPIP gene in response to different stresses, and should add a new layer to the understanding of the physiological function of rice PIP genes...
  22. ncbi request reprint The endo-beta-mannanase gene families in Arabidopsis, rice, and poplar
    Joshua S Yuan
    Department of Plant Sciences, University of Tennessee, 2431 Joe Johnson Drive, Knoxville, TN 37996, USA
    Funct Integr Genomics 7:1-16. 2007
    ....
  23. ncbi request reprint The role of repeating optimization of atrioventricular interval during interim and long-term follow-up after cardiac resynchronization therapy
    Qing Zhang
    Division of Cardiology, S H Ho Cardiovascular and Stroke Centre, Department of Medicine and Therapeutics, Prince of Wales Hospital, The Chinese University of Hong Kong, Shatin, N T, Hong Kong
    Int J Cardiol 124:211-7. 2008
    ..Optimization of atrioventricular interval (AVI) is a cardinal component for the benefits. However, it is unknown if the AVI needs to be re-optimized during long-term follow-up...
  24. ncbi request reprint Purification and characterization of a novel beta-agarase, AgaA34, from Agarivorans albus YKW-34
    Xiao Ting Fu
    College of Food Science and Engineering, Ocean University of China, Qingdao, 266003, China
    Appl Microbiol Biotechnol 78:265-73. 2008
    ..AgaA34 was resistant to denaturing reagents (sodium dodecyl sulfate and urea). Metal ions were not required for its activity, while reducing reagents (beta-Me and dithiothreitol, DTT) increased its activity by 30%...
  25. ncbi request reprint Progression of systolic abnormalities in patients with "isolated" diastolic heart failure and diastolic dysfunction
    Cheuk Man Yu
    Division of Cardiology, Department of Medicine, Queen Mary Hospital, University of Hong Kong, Hong Kong
    Circulation 105:1195-201. 2002
    ..The use of ejection fraction (EF) of 50% as the cutoff point may not be adequate to address such a task. We believe that systolic dysfunction is common in DHF...