Hong Lin

Summary

Affiliation: Agricultural Research Service
Country: USA

Publications

  1. ncbi Genome-wide identification and characterization of simple sequence repeat loci in grape phylloxera, Daktulosphaira vitifoliae
    H Lin
    Crop Diseases, Pests and Genetics Research Unit, USDA ARS, Parlier, CA, USA
    Genet Mol Res 11:1409-16. 2012
  2. ncbi PrimerSNP: a web tool for whole-genome selection of allele-specific and common primers of phylogenetically-related bacterial genomic sequences
    Jiqiang Yao
    Citrus Research Board, 323 W Oak Street, Visalia, CA 93291, USA
    BMC Microbiol 8:185. 2008
  3. ncbi The complete genome sequence of 'Candidatus Liberibacter solanacearum', the bacterium associated with potato zebra chip disease
    Hong Lin
    United States Department of Agriculture Agricultural Research Service, CDPG, San Joaquin Valley Agricultural Sciences Center, Parlier, California, United States of America
    PLoS ONE 6:e19135. 2011
  4. ncbi A new diagnostic system for ultra-sensitive and specific detection and quantification of Candidatus Liberibacter asiaticus, the bacterium associated with citrus Huanglongbing
    Hong Lin
    Crop Diseases, Pests and Genetics Research Unit, San Joaquin Valley Agricultural Science Center, USDA ARS PWA, Parlier, CA 93648, USA
    J Microbiol Methods 81:17-25. 2010
  5. ncbi Transcriptional regulation of the grape cytochrome P450 monooxygenase gene CYP736B expression in response to Xylella fastidiosa infection
    Davis W Cheng
    San Joaquin Valley Agricultural Science Center, USDA ARS 9611 South Riverbend Avenue, Parlier, CA 93648, USA
    BMC Plant Biol 10:135. 2010
  6. ncbi VitisExpDB: a database resource for grape functional genomics
    Harshavardhan Doddapaneni
    USDA ARS, San Joaquin Valley Agricultural Science Center, 9611 So Riverbend Ave, Parlier, CA 93648, USA
    BMC Plant Biol 8:23. 2008
  7. ncbi Comparative analysis of ESTs involved in grape responses to Xylella fastidiosa infection
    Hong Lin
    USDA ARS, 9611 S, Riverbend Avenue, Parlier, California 93648, USA
    BMC Plant Biol 7:8. 2007
  8. ncbi Multilocus microsatellite analysis of 'Candidatus Liberibacter asiaticus' associated with citrus Huanglongbing worldwide
    Md Sajedul Islam
    USDA ARS San Joaquin Valley Agricultural Research Science Center, Parlier, CA 93648, USA
    BMC Microbiol 12:39. 2012
  9. ncbi Acquisition of uncharacterized sequences from Candidatus liberibacter, an unculturable bacterium, using an improved genomic walking method
    Hong Lin
    USDA ARS, San Joaquin Valley Agricultural Science Center, Parlier, CA 93648, USA
    Mol Cell Probes 22:30-7. 2008
  10. ncbi Multilocus simple sequence repeat markers for differentiating strains and evaluating genetic diversity of Xylella fastidiosa
    Hong Lin
    Crop Diseases, Pests and Genetics, U S Department of Agriculture ARS, 9611 S Riverbend Avenue, Parlier, CA 93648, USA
    Appl Environ Microbiol 71:4888-92. 2005

Collaborators

Detail Information

Publications15

  1. ncbi Genome-wide identification and characterization of simple sequence repeat loci in grape phylloxera, Daktulosphaira vitifoliae
    H Lin
    Crop Diseases, Pests and Genetics Research Unit, USDA ARS, Parlier, CA, USA
    Genet Mol Res 11:1409-16. 2012
    ....
  2. ncbi PrimerSNP: a web tool for whole-genome selection of allele-specific and common primers of phylogenetically-related bacterial genomic sequences
    Jiqiang Yao
    Citrus Research Board, 323 W Oak Street, Visalia, CA 93291, USA
    BMC Microbiol 8:185. 2008
    ..PrimerSNP attempts to identify reliable strain-specific markers, on which specific primers are designed for pathogen detection purpose...
  3. ncbi The complete genome sequence of 'Candidatus Liberibacter solanacearum', the bacterium associated with potato zebra chip disease
    Hong Lin
    United States Department of Agriculture Agricultural Research Service, CDPG, San Joaquin Valley Agricultural Sciences Center, Parlier, California, United States of America
    PLoS ONE 6:e19135. 2011
    ..L. solanacearum' probably has reduced capacity for nucleic acid modification, increased amino acid and vitamin biosynthesis functionalities, and gained a high-affinity iron transport system characteristic of several pathogenic microbes...
  4. ncbi A new diagnostic system for ultra-sensitive and specific detection and quantification of Candidatus Liberibacter asiaticus, the bacterium associated with citrus Huanglongbing
    Hong Lin
    Crop Diseases, Pests and Genetics Research Unit, San Joaquin Valley Agricultural Science Center, USDA ARS PWA, Parlier, CA 93648, USA
    J Microbiol Methods 81:17-25. 2010
    ..The technique described here is generic and can be applied to the detection of other plant pathogenic bacteria...
  5. ncbi Transcriptional regulation of the grape cytochrome P450 monooxygenase gene CYP736B expression in response to Xylella fastidiosa infection
    Davis W Cheng
    San Joaquin Valley Agricultural Science Center, USDA ARS 9611 South Riverbend Avenue, Parlier, CA 93648, USA
    BMC Plant Biol 10:135. 2010
    ....
  6. ncbi VitisExpDB: a database resource for grape functional genomics
    Harshavardhan Doddapaneni
    USDA ARS, San Joaquin Valley Agricultural Science Center, 9611 So Riverbend Ave, Parlier, CA 93648, USA
    BMC Plant Biol 8:23. 2008
    ..Our goal is to develop a comprehensive web data source for Vitaceae...
  7. ncbi Comparative analysis of ESTs involved in grape responses to Xylella fastidiosa infection
    Hong Lin
    USDA ARS, 9611 S, Riverbend Avenue, Parlier, California 93648, USA
    BMC Plant Biol 7:8. 2007
    ..The current molecular breeding efforts have identified genetic basis of PD resistance in grapes. However, the transcriptome level characterization of the host response to this pathogen is lacking...
  8. ncbi Multilocus microsatellite analysis of 'Candidatus Liberibacter asiaticus' associated with citrus Huanglongbing worldwide
    Md Sajedul Islam
    USDA ARS San Joaquin Valley Agricultural Research Science Center, Parlier, CA 93648, USA
    BMC Microbiol 12:39. 2012
    ..L. asiaticus' from a worldwide collection. Two hundred eighty seven isolates from USA (Florida), Brazil, China, India, Cambodia, Vietnam, Taiwan, Thailand, and Japan were analyzed...
  9. ncbi Acquisition of uncharacterized sequences from Candidatus liberibacter, an unculturable bacterium, using an improved genomic walking method
    Hong Lin
    USDA ARS, San Joaquin Valley Agricultural Science Center, Parlier, CA 93648, USA
    Mol Cell Probes 22:30-7. 2008
    ....
  10. ncbi Multilocus simple sequence repeat markers for differentiating strains and evaluating genetic diversity of Xylella fastidiosa
    Hong Lin
    Crop Diseases, Pests and Genetics, U S Department of Agriculture ARS, 9611 S Riverbend Avenue, Parlier, CA 93648, USA
    Appl Environ Microbiol 71:4888-92. 2005
    ..fastidiosa strains collected from grape, almond, citrus, and oleander. They are well suited for differentiating strains and studying X. fastidiosa epidemiology and population genetics...
  11. ncbi Comparative phylogenomics and multi-gene cluster analyses of the Citrus Huanglongbing (HLB)-associated bacterium Candidatus Liberibacter
    Harshavardhan Doddapaneni
    USDA ARS, San Joaquin Valley Agricultural Science Center, 9611 So, Riverbend Avenue, Parlier, CA 93648, USA
    BMC Res Notes 1:72. 2008
    ..Expanding the genetic knowledge of this organism may provide better understanding of the pathogen and possibly develop effective strategies for control and management of HLB...
  12. ncbi Diversity and plasticity of the intracellular plant pathogen and insect symbiont "Candidatus Liberibacter asiaticus" as revealed by hypervariable prophage genes with intragenic tandem repeats
    Lijuan Zhou
    University of Florida, IFAS IRREC, Ft Pierce, Florida 34945, USA
    Appl Environ Microbiol 77:6663-73. 2011
    ..Liberibacter asiaticus" populations in the world and a multisource introduction of the "Ca. Liberibacter asiaticus" bacterium into Florida...
  13. ncbi Complete genome sequence of citrus huanglongbing bacterium, 'Candidatus Liberibacter asiaticus' obtained through metagenomics
    Yongping Duan
    USDA ARS USHRL, Fort Pierce, FL 34945, U S A
    Mol Plant Microbe Interact 22:1011-20. 2009
    ..L. asiaticus' as an early-branching and highly divergent member of the family Rhizobiaceae. This is the first genome sequence of an uncultured alpha-proteobacteria that is both an intracellular plant pathogen and insect symbiont...
  14. ncbi Analysis of the genome-wide variations among multiple strains of the plant pathogenic bacterium Xylella fastidiosa
    Harshavardhan Doddapaneni
    University of California Davis, Department of Viticulture and Enology, Davis, CA 95616, USA
    BMC Genomics 7:225. 2006
    ..With the availability of genome sequence information for four strains, it is now possible to perform genome-wide analyses to identify and categorize such DNA variations and to understand their influence on strain functional divergence...
  15. ncbi Identification of a response regulator involved in surface attachment, cell-cell aggregation, exopolysaccharide production and virulence in the plant pathogen Xylella fastidiosa
    Tanja M Voegel
    Department of Plant Pathology, University of California, Davis, CA 95616, USA
    Mol Plant Pathol 14:256-64. 2013
    ..In addition, this mutant had an altered transcriptional profile when compared with wild-type X. fastidiosa in genes for several biofilm-related traits, such as EPS production and haemagglutinin adhesins...