Hong Lin

Summary

Affiliation: Agricultural Research Service
Country: USA

Publications

  1. doi request reprint Genome-wide identification and characterization of simple sequence repeat loci in grape phylloxera, Daktulosphaira vitifoliae
    H Lin
    Crop Diseases, Pests and Genetics Research Unit, USDA ARS, Parlier, CA, USA
    Genet Mol Res 11:1409-16. 2012
  2. pmc Study on citrus response to huanglongbing highlights a down-regulation of defense-related proteins in lemon plants upon 'Ca. Liberibacter asiaticus' infection
    Chika C Nwugo
    San Joaquin Valley Agricultural Sciences Center, Department of Agriculture, ARS, Parlier, California, United States of America
    PLoS ONE 8:e67442. 2013
  3. pmc Reproductive mode and fine-scale population genetic structure of grape phylloxera (Daktulosphaira vitifoliae) in a viticultural area in California
    Md Sajedul Islam
    USDA, Agricultural Resarch Service, USDA ARS, San Joaquin Valley Agricultural Sciences Center, 9611 South Riverbend Avenue, Parlier, CA 93648 9757, USA
    BMC Genet 14:123. 2013
  4. doi request reprint Aspects of pathogen genomics, diversity, epidemiology, vector dynamics, and disease management for a newly emerged disease of potato: zebra chip
    Hong Lin
    United States Department of Agriculture Agricultural Research Service Crop Diseases, Pests and Genetics Research Unit 9611, S Riverbend Avenue, Parlier, CA 93648, USA
    Phytopathology 103:524-37. 2013
  5. pmc PrimerSNP: a web tool for whole-genome selection of allele-specific and common primers of phylogenetically-related bacterial genomic sequences
    Jiqiang Yao
    Citrus Research Board, 323 W Oak Street, Visalia, CA 93291, USA
    BMC Microbiol 8:185. 2008
  6. doi request reprint A new diagnostic system for ultra-sensitive and specific detection and quantification of Candidatus Liberibacter asiaticus, the bacterium associated with citrus Huanglongbing
    Hong Lin
    Crop Diseases, Pests and Genetics Research Unit, San Joaquin Valley Agricultural Science Center, USDA ARS PWA, Parlier, CA 93648, USA
    J Microbiol Methods 81:17-25. 2010
  7. pmc The complete genome sequence of 'Candidatus Liberibacter solanacearum', the bacterium associated with potato zebra chip disease
    Hong Lin
    United States Department of Agriculture Agricultural Research Service, CDPG, San Joaquin Valley Agricultural Sciences Center, Parlier, California, United States of America
    PLoS ONE 6:e19135. 2011
  8. pmc Multilocus microsatellite analysis of 'Candidatus Liberibacter asiaticus' associated with citrus Huanglongbing worldwide
    Md Sajedul Islam
    USDA ARS San Joaquin Valley Agricultural Research Science Center, Parlier, CA 93648, USA
    BMC Microbiol 12:39. 2012
  9. pmc Comparative analysis of ESTs involved in grape responses to Xylella fastidiosa infection
    Hong Lin
    USDA ARS, 9611 S, Riverbend Avenue, Parlier, California 93648, USA
    BMC Plant Biol 7:8. 2007
  10. pmc Transcriptional regulation of the grape cytochrome P450 monooxygenase gene CYP736B expression in response to Xylella fastidiosa infection
    Davis W Cheng
    San Joaquin Valley Agricultural Science Center, USDA ARS 9611 South Riverbend Avenue, Parlier, CA 93648, USA
    BMC Plant Biol 10:135. 2010

Detail Information

Publications19

  1. doi request reprint Genome-wide identification and characterization of simple sequence repeat loci in grape phylloxera, Daktulosphaira vitifoliae
    H Lin
    Crop Diseases, Pests and Genetics Research Unit, USDA ARS, Parlier, CA, USA
    Genet Mol Res 11:1409-16. 2012
    ....
  2. pmc Study on citrus response to huanglongbing highlights a down-regulation of defense-related proteins in lemon plants upon 'Ca. Liberibacter asiaticus' infection
    Chika C Nwugo
    San Joaquin Valley Agricultural Sciences Center, Department of Agriculture, ARS, Parlier, California, United States of America
    PLoS ONE 8:e67442. 2013
    ..Taken together, this study sheds light on general and intra-species specific responses associated with the response of citrus plants to Las...
  3. pmc Reproductive mode and fine-scale population genetic structure of grape phylloxera (Daktulosphaira vitifoliae) in a viticultural area in California
    Md Sajedul Islam
    USDA, Agricultural Resarch Service, USDA ARS, San Joaquin Valley Agricultural Sciences Center, 9611 South Riverbend Avenue, Parlier, CA 93648 9757, USA
    BMC Genet 14:123. 2013
    ..We examined reproductive mode and genetic structure of phylloxera by analyzing microsatellite makers across the samples from four vineyard-sites in California...
  4. doi request reprint Aspects of pathogen genomics, diversity, epidemiology, vector dynamics, and disease management for a newly emerged disease of potato: zebra chip
    Hong Lin
    United States Department of Agriculture Agricultural Research Service Crop Diseases, Pests and Genetics Research Unit 9611, S Riverbend Avenue, Parlier, CA 93648, USA
    Phytopathology 103:524-37. 2013
    ....
  5. pmc PrimerSNP: a web tool for whole-genome selection of allele-specific and common primers of phylogenetically-related bacterial genomic sequences
    Jiqiang Yao
    Citrus Research Board, 323 W Oak Street, Visalia, CA 93291, USA
    BMC Microbiol 8:185. 2008
    ..PrimerSNP attempts to identify reliable strain-specific markers, on which specific primers are designed for pathogen detection purpose...
  6. doi request reprint A new diagnostic system for ultra-sensitive and specific detection and quantification of Candidatus Liberibacter asiaticus, the bacterium associated with citrus Huanglongbing
    Hong Lin
    Crop Diseases, Pests and Genetics Research Unit, San Joaquin Valley Agricultural Science Center, USDA ARS PWA, Parlier, CA 93648, USA
    J Microbiol Methods 81:17-25. 2010
    ..The technique described here is generic and can be applied to the detection of other plant pathogenic bacteria...
  7. pmc The complete genome sequence of 'Candidatus Liberibacter solanacearum', the bacterium associated with potato zebra chip disease
    Hong Lin
    United States Department of Agriculture Agricultural Research Service, CDPG, San Joaquin Valley Agricultural Sciences Center, Parlier, California, United States of America
    PLoS ONE 6:e19135. 2011
    ..L. solanacearum' probably has reduced capacity for nucleic acid modification, increased amino acid and vitamin biosynthesis functionalities, and gained a high-affinity iron transport system characteristic of several pathogenic microbes...
  8. pmc Multilocus microsatellite analysis of 'Candidatus Liberibacter asiaticus' associated with citrus Huanglongbing worldwide
    Md Sajedul Islam
    USDA ARS San Joaquin Valley Agricultural Research Science Center, Parlier, CA 93648, USA
    BMC Microbiol 12:39. 2012
    ..L. asiaticus' from a worldwide collection. Two hundred eighty seven isolates from USA (Florida), Brazil, China, India, Cambodia, Vietnam, Taiwan, Thailand, and Japan were analyzed...
  9. pmc Comparative analysis of ESTs involved in grape responses to Xylella fastidiosa infection
    Hong Lin
    USDA ARS, 9611 S, Riverbend Avenue, Parlier, California 93648, USA
    BMC Plant Biol 7:8. 2007
    ..The current molecular breeding efforts have identified genetic basis of PD resistance in grapes. However, the transcriptome level characterization of the host response to this pathogen is lacking...
  10. pmc Transcriptional regulation of the grape cytochrome P450 monooxygenase gene CYP736B expression in response to Xylella fastidiosa infection
    Davis W Cheng
    San Joaquin Valley Agricultural Science Center, USDA ARS 9611 South Riverbend Avenue, Parlier, CA 93648, USA
    BMC Plant Biol 10:135. 2010
    ....
  11. pmc VitisExpDB: a database resource for grape functional genomics
    Harshavardhan Doddapaneni
    USDA ARS, San Joaquin Valley Agricultural Science Center, 9611 So Riverbend Ave, Parlier, CA 93648, USA
    BMC Plant Biol 8:23. 2008
    ..Our goal is to develop a comprehensive web data source for Vitaceae...
  12. ncbi request reprint Acquisition of uncharacterized sequences from Candidatus liberibacter, an unculturable bacterium, using an improved genomic walking method
    Hong Lin
    USDA ARS, San Joaquin Valley Agricultural Science Center, Parlier, CA 93648, USA
    Mol Cell Probes 22:30-7. 2008
    ....
  13. pmc Multilocus simple sequence repeat markers for differentiating strains and evaluating genetic diversity of Xylella fastidiosa
    Hong Lin
    Crop Diseases, Pests and Genetics, U S Department of Agriculture ARS, 9611 S Riverbend Avenue, Parlier, CA 93648, USA
    Appl Environ Microbiol 71:4888-92. 2005
    ..fastidiosa strains collected from grape, almond, citrus, and oleander. They are well suited for differentiating strains and studying X. fastidiosa epidemiology and population genetics...
  14. pmc Comparative phylogenomics and multi-gene cluster analyses of the Citrus Huanglongbing (HLB)-associated bacterium Candidatus Liberibacter
    Harshavardhan Doddapaneni
    USDA ARS, San Joaquin Valley Agricultural Science Center, 9611 So, Riverbend Avenue, Parlier, CA 93648, USA
    BMC Res Notes 1:72. 2008
    ..Expanding the genetic knowledge of this organism may provide better understanding of the pathogen and possibly develop effective strategies for control and management of HLB...
  15. pmc Diversity and plasticity of the intracellular plant pathogen and insect symbiont "Candidatus Liberibacter asiaticus" as revealed by hypervariable prophage genes with intragenic tandem repeats
    Lijuan Zhou
    University of Florida, IFAS IRREC, Ft Pierce, Florida 34945, USA
    Appl Environ Microbiol 77:6663-73. 2011
    ..Liberibacter asiaticus" populations in the world and a multisource introduction of the "Ca. Liberibacter asiaticus" bacterium into Florida...
  16. doi request reprint Complete genome sequence of citrus huanglongbing bacterium, 'Candidatus Liberibacter asiaticus' obtained through metagenomics
    Yongping Duan
    USDA ARS USHRL, Fort Pierce, FL 34945, U S A
    Mol Plant Microbe Interact 22:1011-20. 2009
    ..L. asiaticus' as an early-branching and highly divergent member of the family Rhizobiaceae. This is the first genome sequence of an uncultured alpha-proteobacteria that is both an intracellular plant pathogen and insect symbiont...
  17. pmc Analysis of the genome-wide variations among multiple strains of the plant pathogenic bacterium Xylella fastidiosa
    Harshavardhan Doddapaneni
    University of California Davis, Department of Viticulture and Enology, Davis, CA 95616, USA
    BMC Genomics 7:225. 2006
    ..With the availability of genome sequence information for four strains, it is now possible to perform genome-wide analyses to identify and categorize such DNA variations and to understand their influence on strain functional divergence...
  18. doi request reprint Identification of a response regulator involved in surface attachment, cell-cell aggregation, exopolysaccharide production and virulence in the plant pathogen Xylella fastidiosa
    Tanja M Voegel
    Department of Plant Pathology, University of California, Davis, CA 95616, USA
    Mol Plant Pathol 14:256-64. 2013
    ..In addition, this mutant had an altered transcriptional profile when compared with wild-type X. fastidiosa in genes for several biofilm-related traits, such as EPS production and haemagglutinin adhesins...