David Grant

Summary

Affiliation: Agricultural Research Service
Country: USA

Publications

  1. pmc SSWAP: A Simple Semantic Web Architecture and Protocol for semantic web services
    Damian D G Gessler
    University of Arizona, Tucson, AZ 85721, USA
    BMC Bioinformatics 10:309. 2009
  2. pmc SoyBase, the USDA-ARS soybean genetics and genomics database
    David Grant
    USDA ARS CICGRU, Department of Agronomy, Iowa State University, Ames, IA 50011, USA
    Nucleic Acids Res 38:D843-6. 2010
  3. pmc RNA-Seq Atlas of Glycine max: a guide to the soybean transcriptome
    Andrew J Severin
    Department of Agronomy, Iowa State University, Ames, IA 50011, USA
    BMC Plant Biol 10:160. 2010
  4. doi request reprint Gene expression patterns are correlated with genomic and genic structure in soybean
    Jenna L Woody
    Department of Agronomy, Iowa State University, Ames, 50011, USA
    Genome 54:10-8. 2011
  5. pmc An integrative approach to genomic introgression mapping
    Andrew J Severin
    Department of Agronomy, Iowa State University, Ames, Iowa 50011, USA
    Plant Physiol 154:3-12. 2010
  6. pmc SoyTEdb: a comprehensive database of transposable elements in the soybean genome
    Jianchang Du
    Department of Agronomy, Purdue University, West Lafayette, IN 47907, USA
    BMC Genomics 11:113. 2010
  7. pmc Integrating microarray analysis and the soybean genome to understand the soybeans iron deficiency response
    Jamie A O'Rourke
    Department of Genetics, Developmental and Cellular Biology, Iowa State University, Ames, Iowa 50011, USA
    BMC Genomics 10:376. 2009
  8. pmc Changes in twelve homoeologous genomic regions in soybean following three rounds of polyploidy
    Andrew J Severin
    Department of Agronomy, Iowa State University, Ames, Iowa 50011, USA
    Plant Cell 23:3129-36. 2011
  9. doi request reprint Identification of candidate signaling genes including regulators of chromosome condensation 1 protein family differentially expressed in the soybean-Phytophthora sojae interaction
    Narayanan N Narayanan
    Department of Agronomy, Iowa State University, Ames, IA 50011, USA
    Theor Appl Genet 118:399-412. 2009
  10. doi request reprint Microsatellite discovery from BAC end sequences and genetic mapping to anchor the soybean physical and genetic maps
    Randy C Shoemaker
    USDA ARS CICGR Unit, Department of Agronomy, Ames, IA 50011 1010, USA
    Genome 51:294-302. 2008

Collaborators

Detail Information

Publications11

  1. pmc SSWAP: A Simple Semantic Web Architecture and Protocol for semantic web services
    Damian D G Gessler
    University of Arizona, Tucson, AZ 85721, USA
    BMC Bioinformatics 10:309. 2009
    ..SSWAP was developed as a hybrid semantic web services technology to overcome limitations found in both pure web service technologies and pure semantic web technologies...
  2. pmc SoyBase, the USDA-ARS soybean genetics and genomics database
    David Grant
    USDA ARS CICGRU, Department of Agronomy, Iowa State University, Ames, IA 50011, USA
    Nucleic Acids Res 38:D843-6. 2010
    ..SoyBase is the repository for controlled vocabularies for soybean growth, development and trait terms, which are also linked to the more general plant ontologies. SoyBase can be accessed at http://soybase.org...
  3. pmc RNA-Seq Atlas of Glycine max: a guide to the soybean transcriptome
    Andrew J Severin
    Department of Agronomy, Iowa State University, Ames, IA 50011, USA
    BMC Plant Biol 10:160. 2010
    ..Patterns of gene expression provide insight into functions of genes with unknown annotation...
  4. doi request reprint Gene expression patterns are correlated with genomic and genic structure in soybean
    Jenna L Woody
    Department of Agronomy, Iowa State University, Ames, 50011, USA
    Genome 54:10-8. 2011
    ....
  5. pmc An integrative approach to genomic introgression mapping
    Andrew J Severin
    Department of Agronomy, Iowa State University, Ames, Iowa 50011, USA
    Plant Physiol 154:3-12. 2010
    ..We conclude that the comparative RNA-Seq approach can be optimized with sufficient sampling and by utilizing a post hoc correction accounting for gene density variation that controls for false discoveries...
  6. pmc SoyTEdb: a comprehensive database of transposable elements in the soybean genome
    Jianchang Du
    Department of Agronomy, Purdue University, West Lafayette, IN 47907, USA
    BMC Genomics 11:113. 2010
    ..The recent availability of the soybean genome sequence has provided an unprecedented opportunity for discovery, and structural and functional characterization of transposable elements in this economically important legume crop...
  7. pmc Integrating microarray analysis and the soybean genome to understand the soybeans iron deficiency response
    Jamie A O'Rourke
    Department of Genetics, Developmental and Cellular Biology, Iowa State University, Ames, Iowa 50011, USA
    BMC Genomics 10:376. 2009
    ..To better understand the effect of iron availability on soybean yield, we identified genes in two near isogenic lines with changes in expression patterns when plants were grown in iron sufficient and iron deficient conditions...
  8. pmc Changes in twelve homoeologous genomic regions in soybean following three rounds of polyploidy
    Andrew J Severin
    Department of Agronomy, Iowa State University, Ames, Iowa 50011, USA
    Plant Cell 23:3129-36. 2011
    ....
  9. doi request reprint Identification of candidate signaling genes including regulators of chromosome condensation 1 protein family differentially expressed in the soybean-Phytophthora sojae interaction
    Narayanan N Narayanan
    Department of Agronomy, Iowa State University, Ames, IA 50011, USA
    Theor Appl Genet 118:399-412. 2009
    ..sojae-infection of a resistant cultivar allowed us to identify many candidate signaling genes that are presumably involved in regulating the expression of defense-related pathways for expression of Phytophthora resistance in soybean...
  10. doi request reprint Microsatellite discovery from BAC end sequences and genetic mapping to anchor the soybean physical and genetic maps
    Randy C Shoemaker
    USDA ARS CICGR Unit, Department of Agronomy, Ames, IA 50011 1010, USA
    Genome 51:294-302. 2008
    ..A strategy is introduced by which physical and genetic map inconsistencies can be resolved using the preliminary 4x assembly of the whole genome sequence of soybean...
  11. ncbi request reprint Mining EST databases to resolve evolutionary events in major crop species
    Jessica A Schlueter
    Interdepartmental Genetics, Department of Genetics Developmental and Cellular Biology, Iowa State University, Ames, IA 50011, USA
    Genome 47:868-76. 2004
    ..This analysis showed that some duplicates seemed to retain expression patterns between pairs, whereas others showed uncorrelated expression...