Ann E Loraine

Summary

Affiliation: Affymetrix Inc
Country: USA

Publications

  1. ncbi Visualizing the genome: techniques for presenting human genome data and annotations
    Ann E Loraine
    Bioinformatics Department, Affymetrix, Inc, 6550 Vallejo Street, Ste 100, Emeryville, CA 94608, USA
    BMC Bioinformatics 3:19. 2002
  2. ncbi Exploring alternative transcript structure in the human genome using blocks and InterPro
    Ann E Loraine
    Bioinformatics Department, Affymetrix, 6550 Vallejo St, Emeryville, CA 94530 USA
    J Bioinform Comput Biol 1:289-306. 2003
  3. ncbi Protein-based analysis of alternative splicing in the human genome
    Ann E Loraine
    Affymetrix, Inc, Emeryville, CA 94608, USA
    Proc IEEE Comput Soc Bioinform Conf 1:118-24. 2002
  4. ncbi Visualization techniques for genomic data
    Ann E Loraine
    Affymetrix, Inc, Emeryville, CA 94608, USA
    Proc IEEE Comput Soc Bioinform Conf 1:321-6. 2002
  5. ncbi NetAffx: Affymetrix probesets and annotations
    Guoying Liu
    Department of Bioinformatics, Affymetrix, Inc, 6550 Vallejo Street, Suite 100, Emeryville, CA 94608, USA
    Nucleic Acids Res 31:82-6. 2003
  6. ncbi CressExpress: a tool for large-scale mining of expression data from Arabidopsis
    Vinodh Srinivasasainagendra
    Section on Statistical Genetics, Department of Biostatistics, University of Alabama, Birmingham, Alabama 35294, USA
    Plant Physiol 147:1004-16. 2008
  7. ncbi Commonality of functional annotation: a method for prioritization of candidate genes from genome-wide linkage studies
    Daniel Shriner
    Department of Biostatistics, Section on Statistical Genetics, University of Alabama at Birmingham, Birmingham, AL 35294, USA
    Nucleic Acids Res 36:e26. 2008
  8. ncbi Genome of Mycoplasma arthritidis
    Kevin Dybvig
    Department of Genetics, University of Alabama Birmingham, Birmingham, Alabama 35294 0024, USA
    Infect Immun 76:4000-8. 2008

Collaborators

Detail Information

Publications8

  1. ncbi Visualizing the genome: techniques for presenting human genome data and annotations
    Ann E Loraine
    Bioinformatics Department, Affymetrix, Inc, 6550 Vallejo Street, Ste 100, Emeryville, CA 94608, USA
    BMC Bioinformatics 3:19. 2002
    ....
  2. ncbi Exploring alternative transcript structure in the human genome using blocks and InterPro
    Ann E Loraine
    Bioinformatics Department, Affymetrix, 6550 Vallejo St, Emeryville, CA 94530 USA
    J Bioinform Comput Biol 1:289-306. 2003
    ..These results demonstrate that amino acid motif databases like BLOCKS and InterPro are useful tools for investigating how alternative transcript structure affects gene function...
  3. ncbi Protein-based analysis of alternative splicing in the human genome
    Ann E Loraine
    Affymetrix, Inc, Emeryville, CA 94608, USA
    Proc IEEE Comput Soc Bioinform Conf 1:118-24. 2002
    ..These results suggest that motif databases such as Blocks and InterPro are potentially useful tools for investigating how alternative transcript structure affects gene function...
  4. ncbi Visualization techniques for genomic data
    Ann E Loraine
    Affymetrix, Inc, Emeryville, CA 94608, USA
    Proc IEEE Comput Soc Bioinform Conf 1:321-6. 2002
    ....
  5. ncbi NetAffx: Affymetrix probesets and annotations
    Guoying Liu
    Department of Bioinformatics, Affymetrix, Inc, 6550 Vallejo Street, Suite 100, Emeryville, CA 94608, USA
    Nucleic Acids Res 31:82-6. 2003
    ....
  6. ncbi CressExpress: a tool for large-scale mining of expression data from Arabidopsis
    Vinodh Srinivasasainagendra
    Section on Statistical Genetics, Department of Biostatistics, University of Alabama, Birmingham, Alabama 35294, USA
    Plant Physiol 147:1004-16. 2008
    ..The tool is available at http://www.cressexpress.org...
  7. ncbi Commonality of functional annotation: a method for prioritization of candidate genes from genome-wide linkage studies
    Daniel Shriner
    Department of Biostatistics, Section on Statistical Genetics, University of Alabama at Birmingham, Birmingham, AL 35294, USA
    Nucleic Acids Res 36:e26. 2008
    ..CFA provides a new tool for studies in which causal genes are expected to participate in a common pathway or process and can easily be extended to utilize annotation schemes in addition to the GO...
  8. ncbi Genome of Mycoplasma arthritidis
    Kevin Dybvig
    Department of Genetics, University of Alabama Birmingham, Birmingham, Alabama 35294 0024, USA
    Infect Immun 76:4000-8. 2008
    ..Of the 635 predicted coding regions, 218 were disrupted in a library of 1,100 members. Dispensable genes included the gene coding for the MAM superantigen and genes coding for ribosomal proteins S15, S18, and L15...