Giulia Kennedy

Summary

Affiliation: Affymetrix Inc
Country: USA

Publications

  1. pmc Massively parallel pathogen identification using high-density microarrays
    Nicolas Berthet
    Genotyping of Pathogens and Public Health Technological Platform, Institut Pasteur, Paris, France
    Microb Biotechnol 1:79-86. 2008
  2. ncbi request reprint Large-scale genotyping of complex DNA
    Giulia C Kennedy
    Affymetrix, 3380 Central Expressway, Santa Clara, California 95051, USA
    Nat Biotechnol 21:1233-7. 2003
  3. pmc Phi29 polymerase based random amplification of viral RNA as an alternative to random RT-PCR
    Nicolas Berthet
    1Genotyping of Pathogens and Public Health Technological Platform, Institut Pasteur, Paris, France
    BMC Mol Biol 9:77. 2008
  4. pmc A genome-wide linkage analysis of alcoholism on microsatellite and single-nucleotide polymorphism data, using alcohol dependence phenotypes and electroencephalogram measures
    Chun Zhang
    Genomics Collaborations Department, Affymetrix, Santa Clara, CA 95051, USA
    BMC Genet 6:S17. 2005
  5. pmc Description of the data from the Collaborative Study on the Genetics of Alcoholism (COGA) and single-nucleotide polymorphism genotyping for Genetic Analysis Workshop 14
    Howard J Edenberg
    Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, 635 Barnhill Drive, Indianapolis, IN, USA
    BMC Genet 6:S2. 2005
  6. pmc Assessment of algorithms for high throughput detection of genomic copy number variation in oligonucleotide microarray data
    Agnes Baross
    Genome Sciences Centre, BC Cancer Agency, British Columbia Cancer Agency, Suite 100, 570 West 7th Avenue, Vancouver, BC, V5Z 4S6, Canada
    BMC Bioinformatics 8:368. 2007

Collaborators

  • Herve Bourhy
  • Nicolas Berthet
  • Wei Min Liu
  • Guoying Liu
  • Xiaojun Di
  • Hajime Matsuzaki
  • Jing Huang
  • Manqiu Cao
  • Chun Zhang
  • Agnes Baross
  • Simon Cawley
  • Howard J Edenberg
  • H Irene Li
  • Allen D Delaney
  • Jennifer Asano
  • Hong Qian
  • Tarun Nayar
  • Stephane Flibotte
  • Mabel Brown-John
  • Patrice Eydoux
  • Marco A Marra
  • Anne Go
  • Sylvie Langlois
  • Nicole Fernandes
  • Adrian Ally
  • Susanna Y Chan
  • J M Friedman
  • Patricia Birch
  • Sarah Shaw Murray
  • Mark Kelleher
  • Mark Hansen
  • Todd Rubano
  • Arnold Oliphant
  • Kevin Jones
  • Rhoberta Steeke
  • Richard Chiles
  • Kimberly F Doheny
  • James Pettengill
  • Gregory Marcus
  • Celeste McBride
  • Ya Yu Tsai
  • John P Rice
  • Elizabeth W Pugh
  • Harley Gorrell
  • Laura J Bierut
  • Paul Boyce
  • Tony Hinrichs
  • Henri Begleiter
  • Bernice Porjesz
  • Stu Shannon
  • Jay A Tischfield

Detail Information

Publications6

  1. pmc Massively parallel pathogen identification using high-density microarrays
    Nicolas Berthet
    Genotyping of Pathogens and Public Health Technological Platform, Institut Pasteur, Paris, France
    Microb Biotechnol 1:79-86. 2008
    ..Our results suggest this technology could be applied in a clinical setting to test for numerous pathogens in a rapid, sensitive and unbiased manner...
  2. ncbi request reprint Large-scale genotyping of complex DNA
    Giulia C Kennedy
    Affymetrix, 3380 Central Expressway, Santa Clara, California 95051, USA
    Nat Biotechnol 21:1233-7. 2003
    ..We also determined the ancestral allele for 8,386 SNPs by genotyping chimpanzee and gorilla DNA. WGSA is highly scaleable and enables the creation of ultrahigh density SNP maps for use in genetic studies...
  3. pmc Phi29 polymerase based random amplification of viral RNA as an alternative to random RT-PCR
    Nicolas Berthet
    1Genotyping of Pathogens and Public Health Technological Platform, Institut Pasteur, Paris, France
    BMC Mol Biol 9:77. 2008
    ..We adapted the QuantiTect Whole Transcriptome Kit (Qiagen) to our purposes and designated the method as Whole Transcriptome Amplification (WTA)...
  4. pmc A genome-wide linkage analysis of alcoholism on microsatellite and single-nucleotide polymorphism data, using alcohol dependence phenotypes and electroencephalogram measures
    Chun Zhang
    Genomics Collaborations Department, Affymetrix, Santa Clara, CA 95051, USA
    BMC Genet 6:S17. 2005
    ..Adding the microsatellite data to the combined SNP dataset improved the results only marginally. The results indicated that SNPs outperform microsatellites with the densest marker sets performing the best...
  5. pmc Description of the data from the Collaborative Study on the Genetics of Alcoholism (COGA) and single-nucleotide polymorphism genotyping for Genetic Analysis Workshop 14
    Howard J Edenberg
    Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, 635 Barnhill Drive, Indianapolis, IN, USA
    BMC Genet 6:S2. 2005
    ..CIDR, Affymetrix, and Illumina provided single-nucleotide polymorphism genotyping of a large subset of the COGA subjects. This article briefly describes the dataset that was provided...
  6. pmc Assessment of algorithms for high throughput detection of genomic copy number variation in oligonucleotide microarray data
    Agnes Baross
    Genome Sciences Centre, BC Cancer Agency, British Columbia Cancer Agency, Suite 100, 570 West 7th Avenue, Vancouver, BC, V5Z 4S6, Canada
    BMC Bioinformatics 8:368. 2007
    ..The popularity of this technology and its associated open source data format have resulted in the development of an increasing number of software packages for the analysis of copy number changes using these SNP arrays...