Srinka Ghosh

Summary

Affiliation: Affymetrix Inc
Country: USA

Publications

  1. pmc Rank-statistics based enrichment-site prediction algorithm developed for chromatin immunoprecipitation on chip experiments
    Srinka Ghosh
    Affymetrix Inc, Santa Clara, CA 95051, USA
    BMC Bioinformatics 7:434. 2006
  2. pmc Differential analysis for high density tiling microarray data
    Srinka Ghosh
    Affymetrix Inc, Santa Clara, CA 95051, USA
    BMC Bioinformatics 8:359. 2007
  3. ncbi request reprint RNA maps reveal new RNA classes and a possible function for pervasive transcription
    Philipp Kapranov
    Affymetrix Laboratory, Affymetrix, Inc, 3420 Central Expressway, Santa Clara, CA, 95051, USA
    Science 316:1484-8. 2007
  4. ncbi request reprint Biological function of unannotated transcription during the early development of Drosophila melanogaster
    J Robert Manak
    Affymetrix, Inc, Santa Clara, California, 95051, USA
    Nat Genet 38:1151-8. 2006
  5. ncbi request reprint Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution
    Jill Cheng
    Affymetrix Inc, Santa Clara, CA 95051, USA
    Science 308:1149-54. 2005
  6. pmc Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    Ewan Birney
    Nature 447:799-816. 2007
  7. ncbi request reprint Osteoarthritis: MR imaging findings in different stages of disease and correlation with clinical findings
    Thomas M Link
    Department of Radiology, University of California, San Francisco, CA, USA
    Radiology 226:373-81. 2003
  8. pmc Temporal profile of replication of human chromosomes
    Yesu Jeon
    Department of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22908, USA
    Proc Natl Acad Sci U S A 102:6419-24. 2005

Detail Information

Publications8

  1. pmc Rank-statistics based enrichment-site prediction algorithm developed for chromatin immunoprecipitation on chip experiments
    Srinka Ghosh
    Affymetrix Inc, Santa Clara, CA 95051, USA
    BMC Bioinformatics 7:434. 2006
    ..The detection and assessment of significance for interactions that emanate from non-canonical and/or un-annotated regions of the genome is especially challenging. This is the motivation behind the proposed algorithm...
  2. pmc Differential analysis for high density tiling microarray data
    Srinka Ghosh
    Affymetrix Inc, Santa Clara, CA 95051, USA
    BMC Bioinformatics 8:359. 2007
    ....
  3. ncbi request reprint RNA maps reveal new RNA classes and a possible function for pervasive transcription
    Philipp Kapranov
    Affymetrix Laboratory, Affymetrix, Inc, 3420 Central Expressway, Santa Clara, CA, 95051, USA
    Science 316:1484-8. 2007
    ..These data support a highly interleaved organization of the human transcriptome...
  4. ncbi request reprint Biological function of unannotated transcription during the early development of Drosophila melanogaster
    J Robert Manak
    Affymetrix, Inc, Santa Clara, California, 95051, USA
    Nat Genet 38:1151-8. 2006
    ..Collectively, these data indicate that at least 85% of the fly genome is transcribed and processed into mature transcripts representing at least 30% of the fly genome...
  5. ncbi request reprint Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution
    Jill Cheng
    Affymetrix Inc, Santa Clara, CA 95051, USA
    Science 308:1149-54. 2005
    ..This organization has important implications for interpreting genotype-phenotype associations, regulation of gene expression, and the definition of a gene...
  6. pmc Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    Ewan Birney
    Nature 447:799-816. 2007
    ..Together, these studies are defining a path for pursuit of a more comprehensive characterization of human genome function...
  7. ncbi request reprint Osteoarthritis: MR imaging findings in different stages of disease and correlation with clinical findings
    Thomas M Link
    Department of Radiology, University of California, San Francisco, CA, USA
    Radiology 226:373-81. 2003
    ..To determine whether knee pain, stiffness, and limited function in patients with different stages of osteoarthritis correlate with the degree of disease assessed on magnetic resonance (MR) images and radiographs...
  8. pmc Temporal profile of replication of human chromosomes
    Yesu Jeon
    Department of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22908, USA
    Proc Natl Acad Sci U S A 102:6419-24. 2005
    ..Thus, at least for aneuploid cancer cells, a typical discrete time of replication in S phase is not seen for large segments of the chromosomes...