Tanya Vavouri

Summary

Affiliation: Wellcome Trust Genome Campus
Country: UK

Publications

  1. ncbi request reprint Defining a genomic radius for long-range enhancer action: duplicated conserved non-coding elements hold the key
    Tanya Vavouri
    Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK, CB10 1SA
    Trends Genet 22:5-10. 2006
  2. pmc Parallel evolution of conserved non-coding elements that target a common set of developmental regulatory genes from worms to humans
    Tanya Vavouri
    Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK
    Genome Biol 8:R15. 2007
  3. ncbi request reprint Prediction of cis-regulatory elements using binding site matrices--the successes, the failures and the reasons for both
    Tanya Vavouri
    Comparative Genomics Group, MRC Rosalind Franklin Centre for Genomics Research, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SB, UK
    Curr Opin Genet Dev 15:395-402. 2005
  4. ncbi request reprint Molecular characterisation of the SAND protein family: a study based on comparative genomics, structural bioinformatics and phylogeny
    Amanda Cottage
    MRC Rosalind Franklin Centre for Genomic Research, Genome Campus, Hinxton, Cambridge, CB10 1SB, UK
    Cell Mol Biol Lett 9:739-53. 2004
  5. pmc Theatre: A software tool for detailed comparative analysis and visualization of genomic sequence
    Yvonne J K Edwards
    Comparative Genomics Group, Research Division, MRC UK Human Genome Mapping Project Resource Centre, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SB, UK
    Nucleic Acids Res 31:3510-7. 2003

Collaborators

Detail Information

Publications5

  1. ncbi request reprint Defining a genomic radius for long-range enhancer action: duplicated conserved non-coding elements hold the key
    Tanya Vavouri
    Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK, CB10 1SA
    Trends Genet 22:5-10. 2006
    ..This enables us to provide the first systematic estimate of the genomic range for distal cis-regulatory interactions in the human genome: half of CNEs are >250 kb away from their associated gene...
  2. pmc Parallel evolution of conserved non-coding elements that target a common set of developmental regulatory genes from worms to humans
    Tanya Vavouri
    Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK
    Genome Biol 8:R15. 2007
    ..Despite their extreme sequence conservation in vertebrates, sequences homologous to CNEs have not been identified in invertebrates...
  3. ncbi request reprint Prediction of cis-regulatory elements using binding site matrices--the successes, the failures and the reasons for both
    Tanya Vavouri
    Comparative Genomics Group, MRC Rosalind Franklin Centre for Genomics Research, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SB, UK
    Curr Opin Genet Dev 15:395-402. 2005
    ..Nonetheless, a combination of experimental, computational and comparative data is likely to reveal aspects of complex regulatory networks in vertebrates, just as it has already done for simple eukaryotic genomes...
  4. ncbi request reprint Molecular characterisation of the SAND protein family: a study based on comparative genomics, structural bioinformatics and phylogeny
    Amanda Cottage
    MRC Rosalind Franklin Centre for Genomic Research, Genome Campus, Hinxton, Cambridge, CB10 1SB, UK
    Cell Mol Biol Lett 9:739-53. 2004
    ..A comprehensive evaluation of yeast and human functional studies in conjunction with our in silico analysis has identified potential roles for some of these motifs...
  5. pmc Theatre: A software tool for detailed comparative analysis and visualization of genomic sequence
    Yvonne J K Edwards
    Comparative Genomics Group, Research Division, MRC UK Human Genome Mapping Project Resource Centre, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SB, UK
    Nucleic Acids Res 31:3510-7. 2003
    ..Theatre can be accessed at http://www.hgmp.mrc.ac.uk/Registered/Webapp/theatre/...