Juan M Vaquerizas

Summary

Affiliation: Wellcome Trust Genome Campus
Country: UK

Publications

  1. doi request reprint How do you find transcription factors? Computational approaches to compile and annotate repertoires of regulators for any genome
    Juan M Vaquerizas
    EMBL European Bioinformatics Institute, Cambridge, UK
    Methods Mol Biol 786:3-19. 2012
  2. doi request reprint A census of human transcription factors: function, expression and evolution
    Juan M Vaquerizas
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, UK
    Nat Rev Genet 10:252-63. 2009
  3. doi request reprint Large-scale nuclear architecture and transcriptional control
    Juan M Vaquerizas
    EMBL European Bioinformatics Institute, CB10 1SD, Cambridge, UK
    Subcell Biochem 52:279-95. 2011
  4. pmc m:Explorer: multinomial regression models reveal positive and negative regulators of longevity in yeast quiescence
    Jüri Reimand
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, UK
    Genome Biol 13:R55. 2012
  5. pmc SpeCond: a method to detect condition-specific gene expression
    Florence M G Cavalli
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge CB10 1SD, UK
    Genome Biol 12:R101. 2011
  6. pmc Comprehensive reanalysis of transcription factor knockout expression data in Saccharomyces cerevisiae reveals many new targets
    Jüri Reimand
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, UK
    Nucleic Acids Res 38:4768-77. 2010

Detail Information

Publications6

  1. doi request reprint How do you find transcription factors? Computational approaches to compile and annotate repertoires of regulators for any genome
    Juan M Vaquerizas
    EMBL European Bioinformatics Institute, Cambridge, UK
    Methods Mol Biol 786:3-19. 2012
    ..These analysis methods provide a solid foundation for further investigations of the transcriptional regulatory system...
  2. doi request reprint A census of human transcription factors: function, expression and evolution
    Juan M Vaquerizas
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, UK
    Nat Rev Genet 10:252-63. 2009
    ..Much remains to be explored, but this study provides a solid foundation for future investigations to elucidate regulatory mechanisms underlying diverse mammalian biological processes...
  3. doi request reprint Large-scale nuclear architecture and transcriptional control
    Juan M Vaquerizas
    EMBL European Bioinformatics Institute, CB10 1SD, Cambridge, UK
    Subcell Biochem 52:279-95. 2011
    ..Here, we summarise the different levels of chromatin organisation in the nucleus and discuss current efforts into characterising the mechanisms that govern it...
  4. pmc m:Explorer: multinomial regression models reveal positive and negative regulators of longevity in yeast quiescence
    Jüri Reimand
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, UK
    Genome Biol 13:R55. 2012
    ..m:Explorer (http://biit.cs.ut.ee/mexplorer/) is instrumental in interrogating eukaryotic regulatory systems using heterogeneous data...
  5. pmc SpeCond: a method to detect condition-specific gene expression
    Florence M G Cavalli
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge CB10 1SD, UK
    Genome Biol 12:R101. 2011
    ..An implementation of SpeCond is freely available as a Bioconductor package at http://www.bioconductor.org/packages/release/bioc/html/SpeCond.html...
  6. pmc Comprehensive reanalysis of transcription factor knockout expression data in Saccharomyces cerevisiae reveals many new targets
    Jüri Reimand
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, UK
    Nucleic Acids Res 38:4768-77. 2010
    ..compendium. The dataset is available from ArrayExpress (accession: E-MTAB-109) and it will be invaluable to any scientist interested in the yeast transcriptional regulatory system...