Chris F Taylor

Summary

Affiliation: Wellcome Trust Genome Campus
Country: UK

Publications

  1. ncbi The use of concept maps during knowledge elicitation in ontology development processes--the nutrigenomics use case
    Alexander Garcia Castro
    Microarray Informatics Team, The European Bioinformatics Institute European Molecular Biology Laboratory Outstation, Wellcome Trust Genome Campus CB10 1SD, Cambridge Hinxton, UK
    BMC Bioinformatics 7:267. 2006
  2. ncbi Standards for reporting bioscience data: a forward look
    Chris F Taylor
    European Bioinformatics Institute, Hinxton, Cambridgeshire CB10 1SD, UK
    Drug Discov Today 12:527-33. 2007
  3. ncbi Progress in standards for reporting omics data
    Chris F Taylor
    European Bioinformatics Institute, Hinxton, Cambridgeshire CB10 1SD, UK
    Curr Opin Drug Discov Devel 10:254-63. 2007
  4. ncbi The minimum information about a proteomics experiment (MIAPE)
    Chris F Taylor
    The HUPO Proteomics Standards Initiative, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK
    Nat Biotechnol 25:887-93. 2007
  5. ncbi Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project
    Chris F Taylor
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK
    Nat Biotechnol 26:889-96. 2008
  6. ncbi Minimum reporting requirements for proteomics: a MIAPE primer
    Chris F Taylor
    The European Bioinformatics Institute, Hinxton, Cambridgeshire, UK
    Proteomics 6:39-44. 2006
  7. ncbi The work of the Human Proteome Organisation's Proteomics Standards Initiative (HUPO PSI)
    Chris F Taylor
    European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, Cambridge, United Kingdom
    OMICS 10:145-51. 2006
  8. ncbi Further steps towards data standardisation: the Proteomic Standards Initiative HUPO 3(rd) annual congress, Beijing 25-27(th) October, 2004
    Sandra Orchard
    EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Proteomics 5:337-9. 2005
  9. ncbi PRIDE: a public repository of protein and peptide identifications for the proteomics community
    Philip Jones
    EMBL Outstation, European Bioinformatics Institute EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
    Nucleic Acids Res 34:D659-63. 2006
  10. ncbi Entering the implementation era: a report on the HUPO-PSI Fall workshop 25-27 September 2006, Washington DC, USA
    Sandra Orchard
    EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Proteomics 7:337-9. 2007

Detail Information

Publications23

  1. ncbi The use of concept maps during knowledge elicitation in ontology development processes--the nutrigenomics use case
    Alexander Garcia Castro
    Microarray Informatics Team, The European Bioinformatics Institute European Molecular Biology Laboratory Outstation, Wellcome Trust Genome Campus CB10 1SD, Cambridge Hinxton, UK
    BMC Bioinformatics 7:267. 2006
    ....
  2. ncbi Standards for reporting bioscience data: a forward look
    Chris F Taylor
    European Bioinformatics Institute, Hinxton, Cambridgeshire CB10 1SD, UK
    Drug Discov Today 12:527-33. 2007
    ..This article briefly summarizes the status quo with respect to biological and biomedical data standards, and offers an assessment of coming developments...
  3. ncbi Progress in standards for reporting omics data
    Chris F Taylor
    European Bioinformatics Institute, Hinxton, Cambridgeshire CB10 1SD, UK
    Curr Opin Drug Discov Devel 10:254-63. 2007
    ..This review describes the context and nature of the new candidate standards and discusses their relevance to drug discovery and development...
  4. ncbi The minimum information about a proteomics experiment (MIAPE)
    Chris F Taylor
    The HUPO Proteomics Standards Initiative, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK
    Nat Biotechnol 25:887-93. 2007
    ....
  5. ncbi Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project
    Chris F Taylor
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK
    Nat Biotechnol 26:889-96. 2008
  6. ncbi Minimum reporting requirements for proteomics: a MIAPE primer
    Chris F Taylor
    The European Bioinformatics Institute, Hinxton, Cambridgeshire, UK
    Proteomics 6:39-44. 2006
    ....
  7. ncbi The work of the Human Proteome Organisation's Proteomics Standards Initiative (HUPO PSI)
    Chris F Taylor
    European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, Cambridge, United Kingdom
    OMICS 10:145-51. 2006
    ....
  8. ncbi Further steps towards data standardisation: the Proteomic Standards Initiative HUPO 3(rd) annual congress, Beijing 25-27(th) October, 2004
    Sandra Orchard
    EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Proteomics 5:337-9. 2005
    ..Parallel sessions allowed the three work groups to present their progress to interested parties and to collect feedback from groups already implementing the available formats...
  9. ncbi PRIDE: a public repository of protein and peptide identifications for the proteomics community
    Philip Jones
    EMBL Outstation, European Bioinformatics Institute EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
    Nucleic Acids Res 34:D659-63. 2006
    ..Data can be retrieved as machine-readable PRIDE or mzData XML (the latter for mass spectra without identifications), or as human-readable HTML...
  10. ncbi Entering the implementation era: a report on the HUPO-PSI Fall workshop 25-27 September 2006, Washington DC, USA
    Sandra Orchard
    EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Proteomics 7:337-9. 2007
    ..In parallel with this, minimum reporting requirement have been developed and are now maturing to the point where they have been submitted for journal publication after prolonged exposure to community-input via the PSI website...
  11. ncbi Further steps in standardisation. Report of the second annual Proteomics Standards Initiative Spring Workshop (Siena, Italy 17-20th April 2005)
    Sandra Orchard
    EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Proteomics 5:3552-5. 2005
    ....
  12. ncbi Second proteomics standards initiative spring workshop
    Sandra Orchard
    EMBL Outstation - European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Expert Rev Proteomics 2:287-9. 2005
  13. ncbi Debunking minimum information myths: one hat need not fit all
    Sandra Orchard
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, UK
    N Biotechnol 25:171-2. 2009
    ..This response is an attempt to set the record straight and ensure that other groups are not discouraged from using these standards or from joining in their further development in either existing or novel areas of research...
  14. ncbi Survey-based naming conventions for use in OBO Foundry ontology development
    Daniel Schober
    EMBL EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
    BMC Bioinformatics 10:125. 2009
    ....
  15. ncbi Towards interoperable reporting standards for omics data: hopes and hurdles
    Susanna Assunta Sansone
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK
    Summit on Translat Bioinforma 2009:112-5. 2009
    ..However, the job of harmonising reporting standards is still very much a work in progress; both software interoperability and the data integration remain challenging as things stand...
  16. ncbi Advances in the development of common interchange standards for proteomic data
    Sandra Orchard
    EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Proteomics 4:2363-5. 2004
    ..At a recent workshop in Nice, participants gathered to review the progress made to date and assist in pushing the process still further forward...
  17. ncbi The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics
    Andrew R Jones
    School of Computer Science, University of Manchester, Oxford Road, Manchester, M13 9PL, UK
    Nat Biotechnol 25:1127-33. 2007
    ..Such advances are important for transparent data management and mining in functional genomics and systems biology...
  18. ncbi Guidelines for reporting the use of mass spectrometry informatics in proteomics
    Pierre-Alain Binz
    Nat Biotechnol 26:862. 2008
  19. ncbi A common open representation of mass spectrometry data and its application to proteomics research
    Patrick G A Pedrioli
    Institute for Systems Biology, 1441 North 34 Street, Seattle, Washington 98103-8904, USA
    Nat Biotechnol 22:1459-66. 2004
    ..We have also developed an accompanying suite of supporting programs. We expect that this format will facilitate data management, interpretation and dissemination in proteomics research...
  20. ncbi Pedro: a configurable data entry tool for XML
    Kevin L Garwood
    Department of Computer Science, University of Manchester, UK
    Bioinformatics 20:2463-5. 2004
    ..AVAILABILITY: The application, source code, example models from several domains and tutorials can be downloaded from http://pedro.man.ac.uk/...
  21. ncbi A systematic approach to modeling, capturing, and disseminating proteomics experimental data
    Chris F Taylor
    School of Biological Sciences, University of Manchester, Oxford Road, Manchester M13 9PL, UK
    Nat Biotechnol 21:247-54. 2003
    ..These make explicit what data might be most usefully captured about proteomics experiments and provide complementary routes toward the implementation of a proteome repository...
  22. ncbi Guidelines for reporting the use of mass spectrometry in proteomics
    Chris F Taylor
    Nat Biotechnol 26:860-1. 2008
  23. ncbi Guidelines for reporting the use of gel electrophoresis in proteomics
    Frank Gibson
    Nat Biotechnol 26:863-4. 2008