David J Studholme

Summary

Affiliation: Wellcome Trust Genome Campus
Country: UK

Publications

  1. pmc Domain architectures of sigma54-dependent transcriptional activators
    David J Studholme
    Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, United Kingdom
    J Bacteriol 185:1757-67. 2003
  2. ncbi In silico analysis of the sigma54-dependent enhancer-binding proteins in Pirellula species strain 1
    David J Studholme
    Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK
    FEMS Microbiol Lett 230:215-25. 2004
  3. ncbi Novel protein domains and motifs in the marine planctomycete Rhodopirellula baltica
    David J Studholme
    Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK
    FEMS Microbiol Lett 236:333-40. 2004
  4. pmc A DNA element recognised by the molybdenum-responsive transcription factor ModE is conserved in Proteobacteria, green sulphur bacteria and Archaea
    David J Studholme
    Wellcome Trust Sanger Institute, Hinxton, Cambridge, CB10 1SA, UK
    BMC Microbiol 3:24. 2003
  5. pmc Bioinformatic identification of novel regulatory DNA sequence motifs in Streptomyces coelicolor
    David J Studholme
    Wellcome Trust Sanger Institute, Hinxton, Cambridge, CB10 1SA, UK
    BMC Microbiol 4:14. 2004
  6. pmc A comparison of Pfam and MEROPS: two databases, one comprehensive, and one specialised
    David J Studholme
    Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    BMC Bioinformatics 4:17. 2003
  7. pmc InterPro, progress and status in 2005
    Nicola J Mulder
    EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Nucleic Acids Res 33:D201-5. 2005
  8. pmc The Pfam protein families database
    Alex Bateman
    Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK
    Nucleic Acids Res 32:D138-41. 2004

Collaborators

Detail Information

Publications8

  1. pmc Domain architectures of sigma54-dependent transcriptional activators
    David J Studholme
    Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, United Kingdom
    J Bacteriol 185:1757-67. 2003
  2. ncbi In silico analysis of the sigma54-dependent enhancer-binding proteins in Pirellula species strain 1
    David J Studholme
    Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK
    FEMS Microbiol Lett 230:215-25. 2004
    ..g. rtcBA) as well as exhibiting differences with that in other taxonomic groups of bacteria, reinforcing the evolutionarily dynamic nature of this regulon...
  3. ncbi Novel protein domains and motifs in the marine planctomycete Rhodopirellula baltica
    David J Studholme
    Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK
    FEMS Microbiol Lett 236:333-40. 2004
    ....
  4. pmc A DNA element recognised by the molybdenum-responsive transcription factor ModE is conserved in Proteobacteria, green sulphur bacteria and Archaea
    David J Studholme
    Wellcome Trust Sanger Institute, Hinxton, Cambridge, CB10 1SA, UK
    BMC Microbiol 3:24. 2003
    ..In E. coli and other Proteobacteria molybdenum metabolism and homeostasis are regulated by the molybdate-responsive transcription factor ModE...
  5. pmc Bioinformatic identification of novel regulatory DNA sequence motifs in Streptomyces coelicolor
    David J Studholme
    Wellcome Trust Sanger Institute, Hinxton, Cambridge, CB10 1SA, UK
    BMC Microbiol 4:14. 2004
    ..We wished to apply a recently published bioinformatic method for identifying novel regulatory sequence signals to gain new insights into regulation in S. coelicolor...
  6. pmc A comparison of Pfam and MEROPS: two databases, one comprehensive, and one specialised
    David J Studholme
    Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    BMC Bioinformatics 4:17. 2003
    ..An additional reason for carrying out this study was to explore the extent of consensus in the definition of a protein family...
  7. pmc InterPro, progress and status in 2005
    Nicola J Mulder
    EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Nucleic Acids Res 33:D201-5. 2005
    ..The database is available for text- and sequence-based searches via a webserver (http://www.ebi.ac.uk/interpro), and for download by anonymous FTP (ftp://ftp.ebi.ac.uk/pub/databases/interpro)...
  8. pmc The Pfam protein families database
    Alex Bateman
    Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK
    Nucleic Acids Res 32:D138-41. 2004
    ..Pfam is available on the web in the UK (http://www.sanger.ac.uk/Software/Pfam/), the USA (http://pfam.wustl.edu/), France (http://pfam.jouy.inra.fr/) and Sweden (http://Pfam.cgb.ki.se/)...