Gaurab Mukherjee

Summary

Affiliation: Wellcome Trust Genome Campus
Country: UK

Publications

  1. pmc Plant-based microarray data at the European Bioinformatics Institute. Introducing AtMIAMExpress, a submission tool for Arabidopsis gene expression data to ArrayExpress
    Gaurab Mukherjee
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Plant Physiol 139:632-6. 2005
  2. pmc MIAME/Plant - adding value to plant microarrray experiments
    Philip Zimmermann
    Swiss Federal Institute of Technology ETH Zurich, ETH Center, CH 8092 Zurich, Switzerland
    Plant Methods 2:1. 2006
  3. ncbi request reprint The ArrayExpress gene expression database: a software engineering and implementation perspective
    Ugis Sarkans
    EMBL Outstation Hinxton, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Bioinformatics 21:1495-501. 2005
  4. pmc Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database
    Guy Cochrane
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Nucleic Acids Res 36:D5-12. 2008
  5. pmc EMBL Nucleotide Sequence Database in 2006
    Tamara Kulikova
    EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus Hinxton, Cambridge, CB10 1SD, UK
    Nucleic Acids Res 35:D16-20. 2007
  6. ncbi request reprint ArrayExpress: a public database of gene expression data at EBI
    Philippe Rocca-Serra
    EMBL Outstation Hinxton, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, United Kingdom
    C R Biol 326:1075-8. 2003
  7. pmc Petabyte-scale innovations at the European Nucleotide Archive
    Guy Cochrane
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 37:D19-25. 2009
  8. pmc EMBL Nucleotide Sequence Database: developments in 2005
    Guy Cochrane
    EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
    Nucleic Acids Res 34:D10-5. 2006

Collaborators

  • Rasko Leinonen
  • Rodrigo Lopez
  • Ugis Sarkans
  • Alvis Brazma
  • Tamara Kulikova
  • Susanna Assunta Sansone
  • Ewan Birney
  • Carola Kanz
  • Jaak Vilo
  • Yves Moreau
  • Steffen Durinck
  • Misha Kapushesky
  • Anna Farne
  • Guy Cochrane
  • Robert Vaughan
  • Siamak Sobhany
  • Quan Lin
  • Hamish McWilliam
  • Nadeem Faruque
  • Gemma Hoad
  • Ruth Akhtar
  • Fehmi Demiralp
  • Dariusz Lorenc
  • Stephen Robinson
  • Lawrence Bower
  • James Bonfield
  • Mikyung Jang
  • Steven Leonard
  • Sheila Plaister
  • Tim Hubbard
  • Dan Wu
  • Sumit Bhattacharyya
  • Paul Browne
  • Francesco Nardone
  • Philippe Aldebert
  • Rolf Apweiler
  • Alastair Baldwin
  • Kirsty Bates
  • Ruth Eberhardt
  • Nicola Althorpe
  • Weimin Zhu
  • Matias Castro
  • Philip Zimmermann
  • Helen Parkinson
  • Philippe Rocca-Serra
  • Petra Ten Hoopen
  • Christopher Hunter
  • Vadim Zalunin
  • Szilveszter Juhos
  • Rajesh Radhakrishnan
  • Richard Gibson
  • Alberto Labarga
  • Tony Cox
  • John Gamble
  • Karyn Duggan
  • Mikael Andersson
  • Vincent Lombard
  • Alexandra van den Broek
  • Margarita Garcia-Hernandez
  • Michelle McHale
  • David Craigon
  • Wilhelm Gruissem
  • Sean May
  • Peter Stoehr
  • Charles Lee
  • Wendy Baker
  • Ulrich Wagner
  • Seung Rhee
  • Maria Pilar Garcia Pastor
  • Katerina Tzouvara
  • Lars Hennig
  • Beatrice Schildknecht
  • Mohammadreza Shojatalab
  • Niran Abeygunawardena
  • Ele Holloway
  • Sergio Contrino
  • Ahmet Oezcimen
  • Patrick Kemmeren
  • Gonzalo Garcia Lara

Detail Information

Publications8

  1. pmc Plant-based microarray data at the European Bioinformatics Institute. Introducing AtMIAMExpress, a submission tool for Arabidopsis gene expression data to ArrayExpress
    Gaurab Mukherjee
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Plant Physiol 139:632-6. 2005
    ..The AtMIAMExpress submission tool is available at http://www.ebi.ac.uk/at-miamexpress/. The software is open source and is available from http://sourceforge.net/projects/miamexpress/. For information, contact miamexpress@ebi.ac.uk...
  2. pmc MIAME/Plant - adding value to plant microarrray experiments
    Philip Zimmermann
    Swiss Federal Institute of Technology ETH Zurich, ETH Center, CH 8092 Zurich, Switzerland
    Plant Methods 2:1. 2006
    ..The power and value of systematic annotation of microarray data is convincingly demonstrated by data warehouses such as Genevestigator(R) or NASCArrays, and better experimental annotation will make these applications even more powerful...
  3. ncbi request reprint The ArrayExpress gene expression database: a software engineering and implementation perspective
    Ugis Sarkans
    EMBL Outstation Hinxton, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Bioinformatics 21:1495-501. 2005
    ..Our experience will be both relevant and useful for most bioinformaticians involved in developing information systems for a wide range of high-throughput technologies...
  4. pmc Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database
    Guy Cochrane
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Nucleic Acids Res 36:D5-12. 2008
    ..Priorities are discussed in terms of how reliably information can be captured, the long-term benefits of its capture and the ease with which it can be captured...
  5. pmc EMBL Nucleotide Sequence Database in 2006
    Tamara Kulikova
    EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus Hinxton, Cambridge, CB10 1SD, UK
    Nucleic Acids Res 35:D16-20. 2007
    ..All available resources can be accessed via the EBI home page at http://www.ebi.ac.uk/. Changes over the past year include changes to the file format, further development of the EMBLCDS dataset and developments to the XML format...
  6. ncbi request reprint ArrayExpress: a public database of gene expression data at EBI
    Philippe Rocca-Serra
    EMBL Outstation Hinxton, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, United Kingdom
    C R Biol 326:1075-8. 2003
    ..Data retrieval is performed through a dedicated web interface. Relevant results may be exported to ExpressionProfiler, the EBI based expression analysis tool available online (http://www.ebi.ac.uk/arrayexpress)...
  7. pmc Petabyte-scale innovations at the European Nucleotide Archive
    Guy Cochrane
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 37:D19-25. 2009
    ....
  8. pmc EMBL Nucleotide Sequence Database: developments in 2005
    Guy Cochrane
    EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
    Nucleic Acids Res 34:D10-5. 2006
    ..New developments, the submission process, data retrieval and access to support are presented in this paper, along with links to sources of further information...