Gaurab Mukherjee

Summary

Affiliation: Wellcome Trust Genome Campus
Country: UK

Publications

  1. ncbi Plant-based microarray data at the European Bioinformatics Institute. Introducing AtMIAMExpress, a submission tool for Arabidopsis gene expression data to ArrayExpress
    Gaurab Mukherjee
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Plant Physiol 139:632-6. 2005
  2. ncbi MIAME/Plant - adding value to plant microarrray experiments
    Philip Zimmermann
    Swiss Federal Institute of Technology ETH Zurich, ETH Center, CH 8092 Zurich, Switzerland
    Plant Methods 2:1. 2006
  3. ncbi The ArrayExpress gene expression database: a software engineering and implementation perspective
    Ugis Sarkans
    EMBL Outstation Hinxton, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Bioinformatics 21:1495-501. 2005
  4. ncbi Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database
    Guy Cochrane
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Nucleic Acids Res 36:D5-12. 2008
  5. ncbi EMBL Nucleotide Sequence Database in 2006
    Tamara Kulikova
    EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus Hinxton, Cambridge, CB10 1SD, UK
    Nucleic Acids Res 35:D16-20. 2007
  6. ncbi Petabyte-scale innovations at the European Nucleotide Archive
    Guy Cochrane
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 37:D19-25. 2009
  7. ncbi ArrayExpress: a public database of gene expression data at EBI
    Philippe Rocca-Serra
    EMBL Outstation-Hinxton, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, United Kingdom
    C R Biol 326:1075-8. 2003
  8. ncbi EMBL Nucleotide Sequence Database: developments in 2005
    Guy Cochrane
    EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
    Nucleic Acids Res 34:D10-5. 2006

Collaborators

  • Rasko Leinonen
  • Rodrigo Lopez
  • Ugis Sarkans
  • Alvis Brazma
  • Tamara Kulikova
  • Ewan Birney
  • Carola Kanz
  • Steffen Durinck
  • Susanna Assunta Sansone
  • Guy Cochrane
  • Hamish McWilliam
  • Quan Lin
  • Siamak Sobhany
  • Nadeem Faruque
  • Robert Vaughan
  • Tim Hubbard
  • Mikyung Jang
  • Gemma Hoad
  • Steven Leonard
  • Sheila Plaister
  • James Bonfield
  • Stephen Robinson
  • Dariusz Lorenc
  • Lawrence Bower
  • Ruth Akhtar
  • Fehmi Demiralp
  • Matias Castro
  • Dan Wu
  • Ruth Eberhardt
  • Alastair Baldwin
  • Francesco Nardone
  • Nicola Althorpe
  • Philippe Aldebert
  • Paul Browne
  • Rolf Apweiler
  • Sumit Bhattacharyya
  • Kirsty Bates
  • Weimin Zhu
  • Philip Zimmermann
  • Helen Parkinson
  • Philippe Rocca-Serra
  • Richard Gibson
  • Rajesh Radhakrishnan
  • Christopher Hunter
  • Szilveszter Juhos
  • Petra Ten Hoopen
  • Vadim Zalunin
  • Alberto Labarga
  • Tony Cox
  • Karyn Duggan
  • Wilhelm Gruissem
  • Mikael Andersson
  • Maria Pilar Garcia Pastor
  • Charles Lee
  • Beatrice Schildknecht
  • John Gamble
  • Vincent Lombard
  • Katerina Tzouvara
  • David Craigon
  • Margarita Garcia-Hernandez
  • Seung Rhee
  • Alexandra van den Broek
  • Lars Hennig
  • Peter Stoehr
  • Wendy Baker
  • Sean May
  • Ulrich Wagner
  • Michelle McHale
  • Sergio Contrino
  • Patrick Kemmeren
  • Gonzalo Garcia Lara
  • Mohammadreza Shojatalab
  • Jaak Vilo
  • Misha Kapushesky
  • Niran Abeygunawardena
  • Ahmet Oezcimen
  • Ele Holloway

Detail Information

Publications8

  1. ncbi Plant-based microarray data at the European Bioinformatics Institute. Introducing AtMIAMExpress, a submission tool for Arabidopsis gene expression data to ArrayExpress
    Gaurab Mukherjee
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Plant Physiol 139:632-6. 2005
    ..The AtMIAMExpress submission tool is available at http://www.ebi.ac.uk/at-miamexpress/. The software is open source and is available from http://sourceforge.net/projects/miamexpress/. For information, contact miamexpress@ebi.ac.uk...
  2. ncbi MIAME/Plant - adding value to plant microarrray experiments
    Philip Zimmermann
    Swiss Federal Institute of Technology ETH Zurich, ETH Center, CH 8092 Zurich, Switzerland
    Plant Methods 2:1. 2006
    ..The power and value of systematic annotation of microarray data is convincingly demonstrated by data warehouses such as Genevestigator(R) or NASCArrays, and better experimental annotation will make these applications even more powerful...
  3. ncbi The ArrayExpress gene expression database: a software engineering and implementation perspective
    Ugis Sarkans
    EMBL Outstation Hinxton, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Bioinformatics 21:1495-501. 2005
    ..Our experience will be both relevant and useful for most bioinformaticians involved in developing information systems for a wide range of high-throughput technologies...
  4. ncbi Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database
    Guy Cochrane
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Nucleic Acids Res 36:D5-12. 2008
    ..Priorities are discussed in terms of how reliably information can be captured, the long-term benefits of its capture and the ease with which it can be captured...
  5. ncbi EMBL Nucleotide Sequence Database in 2006
    Tamara Kulikova
    EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus Hinxton, Cambridge, CB10 1SD, UK
    Nucleic Acids Res 35:D16-20. 2007
    ..All available resources can be accessed via the EBI home page at http://www.ebi.ac.uk/. Changes over the past year include changes to the file format, further development of the EMBLCDS dataset and developments to the XML format...
  6. ncbi Petabyte-scale innovations at the European Nucleotide Archive
    Guy Cochrane
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 37:D19-25. 2009
    ....
  7. ncbi ArrayExpress: a public database of gene expression data at EBI
    Philippe Rocca-Serra
    EMBL Outstation-Hinxton, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, United Kingdom
    C R Biol 326:1075-8. 2003
    ..Data retrieval is performed through a dedicated web interface. Relevant results may be exported to ExpressionProfiler, the EBI based expression analysis tool available online (http://www.ebi.ac.uk/arrayexpress)...
  8. ncbi EMBL Nucleotide Sequence Database: developments in 2005
    Guy Cochrane
    EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
    Nucleic Acids Res 34:D10-5. 2006
    ..New developments, the submission process, data retrieval and access to support are presented in this paper, along with links to sources of further information...