Affiliation: Wellcome Trust Genome Campus
- A method for increasing expressivity of Gene Ontology annotations using a compositional approachRachael P Huntley
Lawrence Berkeley National Laboratory, Genomics Division, Berkeley, CA 94720, USA
BMC Bioinformatics 15:155. 2014..This has limited the specificity of knowledge that can be expressed by GO annotations...
- Dovetailing biology and chemistry: integrating the Gene Ontology with the ChEBI chemical ontologyDavid P Hill
Mouse Genome Informatics, The Jackson Laboratory, Bar Harbor, ME 04609, USA
BMC Genomics 14:513. 2013....
- Relations in biomedical ontologiesBarry Smith
Institute for Formal Ontology and Medical Information Science, Saarland University, D 66041 Saarbrucken, Germany
Genome Biol 6:R46. 2005..The resulting Relation Ontology can promote interoperability of ontologies and support new types of automated reasoning about the spatial and temporal dimensions of biological and medical phenomena...
- How the gene ontology evolvesSabina Leonelli
ESRC Centre for Genomics in Society, University of Exeter, EX4 4PJ Exeter, UK
BMC Bioinformatics 12:325. 2011..This paper illustrates how these processes are carried out, by studying the ways in which curators at the Gene Ontology have hitherto incorporated new knowledge into their resource...
- Get ready to GO! A biologist's guide to the Gene OntologyJane Lomax
European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, UK
Brief Bioinform 6:298-304. 2005..GO annotations are always based on the characteristics of gene products, even though it may be the gene that is cited in the annotation.]...
- It's all GO for plant scientistsJennifer I Clark
EMBL EBI Wellcome Trust Genome Campus Hinxton, Cambridge CB10 1SD, United Kingdom
Plant Physiol 138:1268-79. 2005..The Gene Ontology facilitates the exchange of information between groups of scientists studying similar processes in different model organisms, and so provides a broad range of opportunities for plant scientists...
- Survey-based naming conventions for use in OBO Foundry ontology developmentDaniel Schober
EMBL EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
BMC Bioinformatics 10:125. 2009....