Rasko Leinonen

Summary

Affiliation: Wellcome Trust Genome Campus
Country: UK

Publications

  1. ncbi The European Nucleotide Archive
    Rasko Leinonen
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 39:D28-31. 2011
  2. ncbi Improvements to services at the European Nucleotide Archive
    Rasko Leinonen
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 38:D39-45. 2010
  3. ncbi The sequence read archive
    Rasko Leinonen
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 39:D19-21. 2011
  4. ncbi Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database
    Guy Cochrane
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Nucleic Acids Res 36:D5-12. 2008
  5. ncbi Major submissions tool developments at the European Nucleotide Archive
    Clara Amid
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 40:D43-7. 2012
  6. ncbi The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases
    Richard G Côté
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1QY, UK
    BMC Bioinformatics 8:401. 2007
  7. ncbi EMBL Nucleotide Sequence Database: developments in 2005
    Guy Cochrane
    EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
    Nucleic Acids Res 34:D10-5. 2006
  8. ncbi The EMBL Nucleotide Sequence Database: major new developments
    Guenter Stoesser
    EMBL Outstation, The European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 31:17-22. 2003
  9. ncbi Petabyte-scale innovations at the European Nucleotide Archive
    Guy Cochrane
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 37:D19-25. 2009
  10. ncbi UniSave: the UniProtKB sequence/annotation version database
    Rasko Leinonen
    EMBL Outstation, The European Bioinformatics Institute (EBI) Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Bioinformatics 22:1284-5. 2006

Detail Information

Publications20

  1. ncbi The European Nucleotide Archive
    Rasko Leinonen
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 39:D28-31. 2011
    ....
  2. ncbi Improvements to services at the European Nucleotide Archive
    Rasko Leinonen
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 38:D39-45. 2010
    ..In this article, we briefly describe the content and scope of our archive and introduce major improvements to our services...
  3. ncbi The sequence read archive
    Rasko Leinonen
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 39:D19-21. 2011
    ..We also briefly outline our response to the challenge of data growth...
  4. ncbi Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database
    Guy Cochrane
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Nucleic Acids Res 36:D5-12. 2008
    ..Priorities are discussed in terms of how reliably information can be captured, the long-term benefits of its capture and the ease with which it can be captured...
  5. ncbi Major submissions tool developments at the European Nucleotide Archive
    Clara Amid
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 40:D43-7. 2012
    ....
  6. ncbi The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases
    Richard G Côté
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1QY, UK
    BMC Bioinformatics 8:401. 2007
    ..As a result, we have not found a solution that is generic enough and broad enough in mapping scope to suit our needs...
  7. ncbi EMBL Nucleotide Sequence Database: developments in 2005
    Guy Cochrane
    EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
    Nucleic Acids Res 34:D10-5. 2006
    ..New developments, the submission process, data retrieval and access to support are presented in this paper, along with links to sources of further information...
  8. ncbi The EMBL Nucleotide Sequence Database: major new developments
    Guenter Stoesser
    EMBL Outstation, The European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 31:17-22. 2003
    ..All resources can be accessed via the EBI home page at http://www.ebi.ac.uk...
  9. ncbi Petabyte-scale innovations at the European Nucleotide Archive
    Guy Cochrane
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 37:D19-25. 2009
    ....
  10. ncbi UniSave: the UniProtKB sequence/annotation version database
    Rasko Leinonen
    EMBL Outstation, The European Bioinformatics Institute (EBI) Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Bioinformatics 22:1284-5. 2006
    ..Unlike the UniProtKB, which contains only the latest Swiss-Prot and TrEMBL entry versions, the UniSave provides access to previous versions of these entries. AVAILABILITY: http://www.ebi.ac.uk/uniprot/unisave..
  11. ncbi The EMBL sequence version archive
    Rasko Leinonen
    EMBL Outstation The European Bioinformatics Institute (EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Bioinformatics 19:1861-2. 2003
    ..The EMBL Sequence Version Archive is a new publicly available database retaining also the earlier versions of these entries. AVAILABILITY: http://www.ebi.ac.uk/embl/sva/..
  12. ncbi UniProt archive
    Rasko Leinonen
    EMBL Outstation, The European Bioinformatics Institute (EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Bioinformatics 20:3236-7. 2004
    ..UniParc contains only protein sequences and database cross-references; all other information must be retrieved from the source databases...
  13. ncbi The EMBL Nucleotide Sequence Database
    Tamara Kulikova
    EMBL Outstation, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 32:D27-30. 2004
    ..All available resources can be accessed via the EBI home page at http://www.ebi.ac.uk...
  14. ncbi Facing growth in the European Nucleotide Archive
    Guy Cochrane
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 41:D30-5. 2013
    ..Second, we detail our plans for the deployment of CRAM data compression technology in ENA...
  15. ncbi Efficient storage of high throughput DNA sequencing data using reference-based compression
    Markus Hsi-Yang Fritz
    European Molecular Biology Laboratory s European Bioinformatics Institute EMBL EBI, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SD, United Kingdom
    Genome Res 21:734-40. 2011
    ....
  16. ncbi A map of human genome variation from population-scale sequencing
    Richard M Durbin
    Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge CB10 1SA, UK
    Nature 467:1061-73. 2010
    ..These methods and public data will support the next phase of human genetic research...
  17. ncbi EMBL Nucleotide Sequence Database in 2006
    Tamara Kulikova
    EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus Hinxton, Cambridge, CB10 1SD, UK
    Nucleic Acids Res 35:D16-20. 2007
    ..All available resources can be accessed via the EBI home page at http://www.ebi.ac.uk/. Changes over the past year include changes to the file format, further development of the EMBLCDS dataset and developments to the XML format...
  18. ncbi The 1000 Genomes Project: data management and community access
    Laura Clarke
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Nat Methods 9:459-62. 2012
    ..Members of the project data coordination center have developed and deployed several tools to enable widespread data access...
  19. ncbi The EMBL Nucleotide Sequence Database
    Guenter Stoesser
    EMBL Outstation, The European Bioinformatics Institute (EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 30:21-6. 2002
    ..All resources can be accessed via the EBI home page at http://www.ebi.ac.uk...