Rasko Leinonen

Summary

Affiliation: Wellcome Trust Genome Campus
Country: UK

Publications

  1. pmc The sequence read archive
    Rasko Leinonen
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 39:D19-21. 2011
  2. pmc The European Nucleotide Archive
    Rasko Leinonen
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 39:D28-31. 2011
  3. pmc Improvements to services at the European Nucleotide Archive
    Rasko Leinonen
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 38:D39-45. 2010
  4. pmc Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database
    Guy Cochrane
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Nucleic Acids Res 36:D5-12. 2008
  5. pmc The EMBL Nucleotide Sequence Database: major new developments
    Guenter Stoesser
    EMBL Outstation, The European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 31:17-22. 2003
  6. pmc Major submissions tool developments at the European Nucleotide Archive
    Clara Amid
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 40:D43-7. 2012
  7. pmc The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases
    Richard G Côté
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1QY, UK
    BMC Bioinformatics 8:401. 2007
  8. pmc Petabyte-scale innovations at the European Nucleotide Archive
    Guy Cochrane
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 37:D19-25. 2009
  9. pmc EMBL Nucleotide Sequence Database: developments in 2005
    Guy Cochrane
    EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
    Nucleic Acids Res 34:D10-5. 2006
  10. ncbi request reprint Assembly information services in the European Nucleotide Archive
    Nima Pakseresht
    European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 42:D38-43. 2014

Detail Information

Publications22

  1. pmc The sequence read archive
    Rasko Leinonen
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 39:D19-21. 2011
    ..We also briefly outline our response to the challenge of data growth...
  2. pmc The European Nucleotide Archive
    Rasko Leinonen
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 39:D28-31. 2011
    ....
  3. pmc Improvements to services at the European Nucleotide Archive
    Rasko Leinonen
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 38:D39-45. 2010
    ..In this article, we briefly describe the content and scope of our archive and introduce major improvements to our services...
  4. pmc Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database
    Guy Cochrane
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Nucleic Acids Res 36:D5-12. 2008
    ..Priorities are discussed in terms of how reliably information can be captured, the long-term benefits of its capture and the ease with which it can be captured...
  5. pmc The EMBL Nucleotide Sequence Database: major new developments
    Guenter Stoesser
    EMBL Outstation, The European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 31:17-22. 2003
    ..All resources can be accessed via the EBI home page at http://www.ebi.ac.uk...
  6. pmc Major submissions tool developments at the European Nucleotide Archive
    Clara Amid
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 40:D43-7. 2012
    ....
  7. pmc The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases
    Richard G Côté
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1QY, UK
    BMC Bioinformatics 8:401. 2007
    ..As a result, we have not found a solution that is generic enough and broad enough in mapping scope to suit our needs...
  8. pmc Petabyte-scale innovations at the European Nucleotide Archive
    Guy Cochrane
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 37:D19-25. 2009
    ....
  9. pmc EMBL Nucleotide Sequence Database: developments in 2005
    Guy Cochrane
    EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
    Nucleic Acids Res 34:D10-5. 2006
    ..New developments, the submission process, data retrieval and access to support are presented in this paper, along with links to sources of further information...
  10. ncbi request reprint Assembly information services in the European Nucleotide Archive
    Nima Pakseresht
    European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 42:D38-43. 2014
    ..In this article, we briefly review ENA content and growth over 2013, describe our rapidly developing services for genome assembly information and outline further major developments over the last year. ..
  11. pmc Facing growth in the European Nucleotide Archive
    Guy Cochrane
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 41:D30-5. 2013
    ..Second, we detail our plans for the deployment of CRAM data compression technology in ENA...
  12. ncbi request reprint UniSave: the UniProtKB sequence/annotation version database
    Rasko Leinonen
    EMBL Outstation, The European Bioinformatics Institute EBI Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Bioinformatics 22:1284-5. 2006
    ..Unlike the UniProtKB, which contains only the latest Swiss-Prot and TrEMBL entry versions, the UniSave provides access to previous versions of these entries. AVAILABILITY: http://www.ebi.ac.uk/uniprot/unisave..
  13. ncbi request reprint The EMBL sequence version archive
    Rasko Leinonen
    EMBL Outstation The European Bioinformatics Institute EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Bioinformatics 19:1861-2. 2003
    ..Its entries are subject to changes, but only the most recent versions are preserved in the database. The EMBL Sequence Version Archive is a new publicly available database retaining also the earlier versions of these entries...
  14. pmc The EMBL Nucleotide Sequence Database
    Tamara Kulikova
    EMBL Outstation, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 32:D27-30. 2004
    ..All available resources can be accessed via the EBI home page at http://www.ebi.ac.uk...
  15. ncbi request reprint UniProt archive
    Rasko Leinonen
    EMBL Outstation, The European Bioinformatics Institute EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Bioinformatics 20:3236-7. 2004
    ..UniParc contains only protein sequences and database cross-references; all other information must be retrieved from the source databases...
  16. ncbi request reprint EBI metagenomics--a new resource for the analysis and archiving of metagenomic data
    Sarah Hunter
    European Molecular Biology Laboratory, European Bioinformatics Institute EMBL EBI, Wellcome Trust Genome Campus, Hinxton, CB10 1SD, UK, Oxford e Research Centre, University of Oxford, 7 Keble Road, Oxford, OX1 3QG, UK and NERC Centre for Ecology and Hydrology, Maclean Building, Benson Lane, Crowmarsh Gifford, Wallingford, OX10 8BB, UK
    Nucleic Acids Res 42:D600-6. 2014
    ....
  17. pmc Efficient storage of high throughput DNA sequencing data using reference-based compression
    Markus Hsi-Yang Fritz
    European Molecular Biology Laboratory s European Bioinformatics Institute EMBL EBI, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SD, United Kingdom
    Genome Res 21:734-40. 2011
    ....
  18. pmc A map of human genome variation from population-scale sequencing
    Richard M Durbin
    Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge CB10 1SA, UK
    Nature 467:1061-73. 2010
    ..These methods and public data will support the next phase of human genetic research...
  19. pmc EMBL Nucleotide Sequence Database in 2006
    Tamara Kulikova
    EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus Hinxton, Cambridge, CB10 1SD, UK
    Nucleic Acids Res 35:D16-20. 2007
    ..All available resources can be accessed via the EBI home page at http://www.ebi.ac.uk/. Changes over the past year include changes to the file format, further development of the EMBLCDS dataset and developments to the XML format...
  20. pmc The 1000 Genomes Project: data management and community access
    Laura Clarke
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Nat Methods 9:459-62. 2012
    ..Members of the project data coordination center have developed and deployed several tools to enable widespread data access...
  21. pmc The EMBL Nucleotide Sequence Database
    Guenter Stoesser
    EMBL Outstation, The European Bioinformatics Institute EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 30:21-6. 2002
    ..All resources can be accessed via the EBI home page at http://www.ebi.ac.uk...