Ian Korf

Summary

Affiliation: Wellcome Trust Genome Campus
Country: UK

Publications

  1. ncbi request reprint Serial BLAST searching
    Ian Korf
    The Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK
    Bioinformatics 19:1492-6. 2003
  2. pmc Gene finding in novel genomes
    Ian Korf
    Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SA, UK
    BMC Bioinformatics 5:59. 2004
  3. pmc A probabilistic model of 3' end formation in Caenorhabditis elegans
    Ashwin Hajarnavis
    Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SA, UK
    Nucleic Acids Res 32:3392-9. 2004
  4. ncbi request reprint CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
    Genis Parra
    UC Davis Genome Center, University of California Davis, Davis, CA 95616, USA
    Bioinformatics 23:1061-7. 2007
  5. pmc The Bioperl toolkit: Perl modules for the life sciences
    Jason E Stajich
    University Program in Genetics, Duke University, Durham, North Carolina 27710, USA
    Genome Res 12:1611-8. 2002
  6. pmc Leveraging the mouse genome for gene prediction in human: from whole-genome shotgun reads to a global synteny map
    Paul Flicek
    Department of Computer Science and Engineering, Washington University, St Louis, Missouri 63130, USA
    Genome Res 13:46-54. 2003
  7. ncbi request reprint Initial sequencing and comparative analysis of the mouse genome
    Robert H Waterston
    Genome Sequencing Center, Washington University School of Medicine, Campus Box 8501, 4444 Forest Park Avenue, St Louis, Missouri 63108, USA
    Nature 420:520-62. 2002
  8. pmc Draft genome of the filarial nematode parasite Brugia malayi
    Elodie Ghedin
    Division of Infectious Diseases, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261, USA
    Science 317:1756-60. 2007
  9. pmc MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes
    Brandi L Cantarel
    Eccles Institute of Human Genetics, University of Utah, Salt Lake City, Utah 84112, USA
    Genome Res 18:188-96. 2008
  10. pmc Promoter-proximal introns in Arabidopsis thaliana are enriched in dispersed signals that elevate gene expression
    Alan B Rose
    Molecular and Cellular Biology, University of California, Davis, California 95616, USA
    Plant Cell 20:543-51. 2008

Detail Information

Publications10

  1. ncbi request reprint Serial BLAST searching
    Ian Korf
    The Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK
    Bioinformatics 19:1492-6. 2003
    ....
  2. pmc Gene finding in novel genomes
    Ian Korf
    Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SA, UK
    BMC Bioinformatics 5:59. 2004
    ..Computational gene prediction continues to be an important problem, especially for genomes with little experimental data...
  3. pmc A probabilistic model of 3' end formation in Caenorhabditis elegans
    Ashwin Hajarnavis
    Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SA, UK
    Nucleic Acids Res 32:3392-9. 2004
    ..We have made available a complete set of polyadenylation site predictions for the C.elegans genome, including a subset of 6570 supported by aligned transcripts...
  4. ncbi request reprint CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
    Genis Parra
    UC Davis Genome Center, University of California Davis, Davis, CA 95616, USA
    Bioinformatics 23:1061-7. 2007
    ..Unfortunately, many new genome projects lack comprehensive experimental data to derive a reliable initial set of genes...
  5. pmc The Bioperl toolkit: Perl modules for the life sciences
    Jason E Stajich
    University Program in Genetics, Duke University, Durham, North Carolina 27710, USA
    Genome Res 12:1611-8. 2002
    ..We conclude with a discussion of how the open-source nature of the project has contributed to the development effort...
  6. pmc Leveraging the mouse genome for gene prediction in human: from whole-genome shotgun reads to a global synteny map
    Paul Flicek
    Department of Computer Science and Engineering, Washington University, St Louis, Missouri 63130, USA
    Genome Res 13:46-54. 2003
    ..Our human annotation using the mouse assembly is conservative, predicting only 25,622 genes, and appears to be one of the best de novo annotations of the human genome to date...
  7. ncbi request reprint Initial sequencing and comparative analysis of the mouse genome
    Robert H Waterston
    Genome Sequencing Center, Washington University School of Medicine, Campus Box 8501, 4444 Forest Park Avenue, St Louis, Missouri 63108, USA
    Nature 420:520-62. 2002
    ....
  8. pmc Draft genome of the filarial nematode parasite Brugia malayi
    Elodie Ghedin
    Division of Infectious Diseases, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261, USA
    Science 317:1756-60. 2007
    ..malayi to niches in its human and vector hosts and insights into the molecular basis of a mutualistic relationship with its Wolbachia endosymbiont. These findings offer a foundation for rational drug design...
  9. pmc MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes
    Brandi L Cantarel
    Eccles Institute of Human Genetics, University of Utah, Salt Lake City, Utah 84112, USA
    Genome Res 18:188-96. 2008
    ..MAKER should prove especially useful for emerging model organism genome projects for which extensive bioinformatics resources may not be readily available...
  10. pmc Promoter-proximal introns in Arabidopsis thaliana are enriched in dispersed signals that elevate gene expression
    Alan B Rose
    Molecular and Cellular Biology, University of California, Davis, California 95616, USA
    Plant Cell 20:543-51. 2008
    ..The signals responsible for intron-mediated enhancement are apparently conserved between Arabidopsis and rice (Oryza sativa) despite the large evolutionary distance separating these plants...